\e\e\e:q - RSS feed" href="/?p=epclust.git;a=rss;f=%1B%1B%1B:q" type="application/rss+xml" /> \e\e\e:q - RSS feed (no merges)" href="/?p=epclust.git;a=rss;f=%1B%1B%1B:q;opt=--no-merges" type="application/rss+xml" /> \e\e\e:q - Atom feed" href="/?p=epclust.git;a=atom;f=%1B%1B%1B:q" type="application/atom+xml" /> \e\e\e:q - Atom feed (no merges)" href="/?p=epclust.git;a=atom;f=%1B%1B%1B:q;opt=--no-merges" type="application/atom+xml" />
separate TODO and wrapper example
[epclust.git] / \e\e\e:q
1 \e[1mdiff --git a/TODO b/TODO\e[m
2 \e[1mindex 9fd325a..cd454f2 100644\e[m
3 \e[1m--- a/TODO\e[m
4 \e[1m+++ b/TODO\e[m
5 \e[36m@@ -18,25 +18,21 @@\e[m \e[mA faire:\e[m
6 - finir les experiences (sur nb de classes, nb de curves / chunk, nb de procs)\e[m
7 et sur d'autres architectures\e[m
8 \e[m
9 \e[31m-\e[m
10 \e[31m-\e[m
11 \e[31m-\e[m
12 \e[31m-\e[m
13 dans old_C_code/build :\e[m
14 cmake ../stage1/src\e[m
15 make\e[m
16 \e[m
17 dans data/, lancer R puis :\e[m
18 source("../old_C_code/wrapper.R")\e[m
19 \e[31m-serialize("../old_C_code/build", "2009.csv","2009.bin")\e[m
20 \e[31m-\e[m
21 \e[31m-\e[m
22 \e[31m-\e[m
23 \e[31m- ppam_exe("build",np,"pathTo2010.bin","nbSeriesPerChunk nbClusters 1 2")\e[m
24 \e[31m- C = getMedoids("build", "ppamResult.xml", "ppamFinalSeries.bin")\e[m
25 \e[31m- quelques_series = deserialize("pathTo2010.bin", rangs...)\e[m
26 \e[31m- #plot C ... et quelques_series ...\e[m
27 \e[31m- getDistor("buid", "ppamResult.xml", "pathTo2010.bin")\e[m
28 \e[32m+\e[m\e[32mserialize("../old_C_code/build", "2009.csv","2009.bin",1)\e[m
29 \e[32m+\e[m\e[32mlibrary(parallel)\e[m
30 \e[32m+\e[m\e[32mnp = detectCores()\e[m
31 \e[32m+\e[m\e[32mnbSeriesPerChunk = 3000\e[m
32 \e[32m+\e[m\e[32mnbClusters = 20\e[m
33 \e[32m+\e[m\e[32mppam_exe("../old_C_code/build",np,"2009.bin",nbSeriesPerChunk,nbClusters)\e[m
34 \e[32m+\e[m\e[32mC = getMedoids("../old_C_code/build", "ppamResult.xml", "ppamFinalSeries.bin")\e[m
35 \e[32m+\e[m\e[32mfirst100series = deserialize("../old_C_code/build", "2009.bin", "2009.csv.part", "1-100")\e[m
36 \e[32m+\e[m\e[32mdistor = getDistor("../old_C_code/build", "ppamResult.xml", "2009.bin")\e[m
37 \e[m
38 - interface matrice -> binaire\e[m
39 OK\e[m
40 \e[1mdiff --git a/old_C_code/wrapper.R b/old_C_code/wrapper.R\e[m
41 \e[1mindex ee15a79..d6d05e1 100644\e[m
42 \e[1m--- a/old_C_code/wrapper.R\e[m
43 \e[1m+++ b/old_C_code/wrapper.R\e[m
44 \e[36m@@ -1,3 +1,21 @@\e[m
45 \e[32m+\e[m\e[32m#Exemple :\e[m
46 \e[32m+\e[m\e[32m#\e[m
47 \e[32m+\e[m\e[32m#dans old_C_code/build :\e[m
48 \e[32m+\e[m\e[32m#cmake ../stage1/src\e[m
49 \e[32m+\e[m\e[32m#make\e[m
50 \e[32m+\e[m\e[32m#\e[m
51 \e[32m+\e[m\e[32m#dans data/, lancer R puis :\e[m
52 \e[32m+\e[m\e[32m#source("../old_C_code/wrapper.R")\e[m
53 \e[32m+\e[m\e[32m#serialize("../old_C_code/build", "2009.csv","2009.bin",1)\e[m
54 \e[32m+\e[m\e[32m#library(parallel)\e[m
55 \e[32m+\e[m\e[32m#np = detectCores()\e[m
56 \e[32m+\e[m\e[32m#nbSeriesPerChunk = 3000\e[m
57 \e[32m+\e[m\e[32m#nbClusters = 20\e[m
58 \e[32m+\e[m\e[32m#ppam_exe("../old_C_code/build",np,"2009.bin",nbSeriesPerChunk,nbClusters)\e[m
59 \e[32m+\e[m\e[32m#C = getMedoids("../old_C_code/build", "ppamResult.xml", "ppamFinalSeries.bin")\e[m
60 \e[32m+\e[m\e[32m#first100series = deserialize("../old_C_code/build", "2009.bin", "2009.csv.part", "1-100")\e[m
61 \e[32m+\e[m\e[32m#distor = getDistor("../old_C_code/build", "ppamResult.xml", "2009.bin")\e[m
62 \e[32m+\e[m
63 ppam_exe = function(path=".", np=parallel::detectCores(), data=NULL,\e[m
64 nbSeriesPerChunk, nbClusters, randomize=1, p_dissims=2)\e[m
65 {\e[m