epclust.git
4 years ago'update' master
Benjamin Auder [Thu, 6 Feb 2020 19:07:49 +0000 (20:07 +0100)]
'update'

4 years agomerge with remote
Benjamin Auder [Thu, 6 Feb 2020 19:05:43 +0000 (20:05 +0100)]
merge with remote

6 years agoFirst commit
Benjamin Auder [Mon, 22 Jan 2018 15:09:19 +0000 (16:09 +0100)]
First commit

6 years agoload-balancing parLapply for WER dists computations
Benjamin Auder [Tue, 25 Apr 2017 13:40:19 +0000 (15:40 +0200)]
load-balancing parLapply for WER dists computations

6 years agoupdate TODO
Benjamin Auder [Mon, 24 Apr 2017 19:46:25 +0000 (21:46 +0200)]
update TODO

7 years ago'update'
Benjamin Auder [Mon, 10 Apr 2017 16:06:30 +0000 (18:06 +0200)]
'update'

7 years ago'update'
Benjamin Auder [Fri, 7 Apr 2017 15:07:58 +0000 (17:07 +0200)]
'update'

7 years agoadd TODO Jairo
Benjamin Auder [Fri, 7 Apr 2017 10:01:50 +0000 (12:01 +0200)]
add TODO Jairo

7 years agorename bib
Benjamin Auder [Thu, 6 Apr 2017 15:26:46 +0000 (17:26 +0200)]
rename bib

7 years agobiblio
Benjamin Auder [Thu, 6 Apr 2017 15:22:29 +0000 (17:22 +0200)]
biblio

7 years agobiblio
Benjamin Auder [Thu, 6 Apr 2017 16:23:41 +0000 (18:23 +0200)]
biblio

7 years agoadd link to biwevelets file in TODO
Benjamin Auder [Thu, 23 Mar 2017 16:35:59 +0000 (17:35 +0100)]
add link to biwevelets file in TODO

7 years agoupdate TODO after talk with Jairo
Benjamin Auder [Thu, 23 Mar 2017 16:05:03 +0000 (17:05 +0100)]
update TODO after talk with Jairo

7 years agogitattributes shouldn't be versioned
Benjamin Auder [Thu, 23 Mar 2017 15:03:50 +0000 (16:03 +0100)]
gitattributes shouldn't be versioned

7 years agoupdate biblio
Benjamin Auder [Tue, 21 Mar 2017 18:59:37 +0000 (19:59 +0100)]
update biblio

7 years agoadd a few TODOs for plot
Benjamin Auder [Mon, 20 Mar 2017 22:38:41 +0000 (23:38 +0100)]
add a few TODOs for plot

7 years agofix convert_to_CSV.c
Benjamin Auder [Sat, 18 Mar 2017 07:13:55 +0000 (08:13 +0100)]
fix convert_to_CSV.c

7 years agoadd some prints in convert_to_CSV.c; almost working. TODO...
Benjamin Auder [Fri, 17 Mar 2017 16:18:04 +0000 (17:18 +0100)]
add some prints in convert_to_CSV.c; almost working. TODO...

7 years agoadvance on data/proprocessing
Benjamin Auder [Fri, 17 Mar 2017 16:02:44 +0000 (17:02 +0100)]
advance on data/proprocessing

7 years agofix tests: remove 'parll' arg
Benjamin Auder [Fri, 17 Mar 2017 15:43:25 +0000 (16:43 +0100)]
fix tests: remove 'parll' arg

7 years ago[cosmetics] Slight improvements in doc
Benjamin Auder [Fri, 17 Mar 2017 15:15:04 +0000 (16:15 +0100)]
[cosmetics] Slight improvements in doc

7 years agoRemove parll arg (redundant with ncores_XX)
Benjamin Auder [Fri, 17 Mar 2017 14:58:35 +0000 (15:58 +0100)]
Remove parll arg (redundant with ncores_XX)

7 years agodefault values for computeWerDists
Benjamin Auder [Fri, 17 Mar 2017 14:12:38 +0000 (15:12 +0100)]
default values for computeWerDists

7 years agofix typo
Benjamin Auder [Wed, 15 Mar 2017 15:38:07 +0000 (16:38 +0100)]
fix typo

7 years ago'update'
Benjamin Auder [Wed, 15 Mar 2017 11:41:36 +0000 (12:41 +0100)]
'update'

7 years agowork on CSV preprocessing
Benjamin Auder [Tue, 14 Mar 2017 14:59:40 +0000 (15:59 +0100)]
work on CSV preprocessing

7 years agoBug fixed: package OK
Benjamin Auder [Tue, 14 Mar 2017 12:09:07 +0000 (13:09 +0100)]
Bug fixed: package OK

7 years agoseveral fixes; still some issues db,bin != ascii,csv
Benjamin Auder [Tue, 14 Mar 2017 02:23:59 +0000 (03:23 +0100)]
several fixes; still some issues db,bin != ascii,csv

7 years agoimprove/fix comments - TODO: debug examples, CSV and after
Benjamin Auder [Mon, 13 Mar 2017 18:19:18 +0000 (19:19 +0100)]
improve/fix comments - TODO: debug examples, CSV and after

7 years agodrop enercast submodule; drop Rcpp requirement; fix doc, complete code, fix fix fix
Benjamin Auder [Mon, 13 Mar 2017 16:45:20 +0000 (17:45 +0100)]
drop enercast submodule; drop Rcpp requirement; fix doc, complete code, fix fix fix

7 years ago'update'
Benjamin Auder [Mon, 13 Mar 2017 11:42:59 +0000 (12:42 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Mon, 13 Mar 2017 03:51:37 +0000 (04:51 +0100)]
'update'

7 years agocode seems OK; still wavelets test to write
Benjamin Auder [Mon, 13 Mar 2017 01:03:00 +0000 (02:03 +0100)]
code seems OK; still wavelets test to write

7 years agoadd comments, fix some things. TODO: comment tests, finish computeWerDists, test it
Benjamin Auder [Sat, 11 Mar 2017 15:57:48 +0000 (16:57 +0100)]
add comments, fix some things. TODO: comment tests, finish computeWerDists, test it

7 years agoWith sync_mean to average synchrones: bad idea, will be removed
Benjamin Auder [Sat, 11 Mar 2017 12:57:24 +0000 (13:57 +0100)]
With sync_mean to average synchrones: bad idea, will be removed

7 years agosave state; test clustering not OK, all others OK
Benjamin Auder [Fri, 10 Mar 2017 21:55:26 +0000 (22:55 +0100)]
save state; test clustering not OK, all others OK

7 years agofixes: TODO, debug test.clustering.R and finish writing clustering.R
Benjamin Auder [Fri, 10 Mar 2017 18:04:45 +0000 (19:04 +0100)]
fixes: TODO, debug test.clustering.R and finish writing clustering.R

7 years agosave state: wrong idea for indices repartition
Benjamin Auder [Fri, 10 Mar 2017 15:43:00 +0000 (16:43 +0100)]
save state: wrong idea for indices repartition

7 years ago'update'
Benjamin Auder [Fri, 10 Mar 2017 11:38:09 +0000 (12:38 +0100)]
'update'

7 years agoAdd comments to easily read code
Benjamin Auder [Fri, 10 Mar 2017 11:09:09 +0000 (12:09 +0100)]
Add comments to easily read code

7 years agoTODO: args, et finir tests; relancer
Benjamin Auder [Fri, 10 Mar 2017 07:10:49 +0000 (08:10 +0100)]
TODO: args, et finir tests; relancer

7 years agodraft final form of current package
Benjamin Auder [Thu, 9 Mar 2017 16:22:09 +0000 (17:22 +0100)]
draft final form of current package

7 years agoadd submodule enercast
Benjamin Auder [Thu, 9 Mar 2017 16:04:05 +0000 (17:04 +0100)]
add submodule enercast

7 years agosave intermediate
Benjamin Auder [Thu, 9 Mar 2017 14:56:37 +0000 (15:56 +0100)]
save intermediate

7 years agofix typo, add some TODO
Benjamin Auder [Thu, 9 Mar 2017 10:58:25 +0000 (11:58 +0100)]
fix typo, add some TODO

7 years ago'update'
Benjamin Auder [Thu, 9 Mar 2017 03:26:00 +0000 (04:26 +0100)]
'update'

7 years agouse Rcpp; ongoing debug for parallel synchrones computation
Benjamin Auder [Thu, 9 Mar 2017 03:25:51 +0000 (04:25 +0100)]
use Rcpp; ongoing debug for parallel synchrones computation

7 years agoWER distances is a regular matrix, fix doc (weird latex error?)
Benjamin Auder [Wed, 8 Mar 2017 21:30:16 +0000 (22:30 +0100)]
WER distances is a regular matrix, fix doc (weird latex error?)

7 years agoimprovements
Benjamin Auder [Wed, 8 Mar 2017 20:50:53 +0000 (21:50 +0100)]
improvements

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 14:45:31 +0000 (15:45 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 14:04:44 +0000 (15:04 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 11:43:45 +0000 (12:43 +0100)]
'update'

7 years agoadd some TODOs
Benjamin Auder [Wed, 8 Mar 2017 10:52:39 +0000 (11:52 +0100)]
add some TODOs

7 years agoparallel version running; TODO: check==sequential, plotting routines, parser; check...
Benjamin Auder [Wed, 8 Mar 2017 02:12:36 +0000 (03:12 +0100)]
parallel version running; TODO: check==sequential, plotting routines, parser; check memory

7 years agoforgot to pass parll arg
Benjamin Auder [Wed, 8 Mar 2017 01:34:24 +0000 (02:34 +0100)]
forgot to pass parll arg

7 years agooption to run sequentially. various fixes. R CMD check OK
Benjamin Auder [Wed, 8 Mar 2017 00:52:24 +0000 (01:52 +0100)]
option to run sequentially. various fixes. R CMD check OK

7 years agoignore generated binary files while debugging
Benjamin Auder [Tue, 7 Mar 2017 02:01:42 +0000 (03:01 +0100)]
ignore generated binary files while debugging

7 years agoFix package, ok for R CMD check - ongoing debug for main function
Benjamin Auder [Tue, 7 Mar 2017 01:54:03 +0000 (02:54 +0100)]
Fix package, ok for R CMD check - ongoing debug for main function

7 years ago'update'
Benjamin Auder [Mon, 6 Mar 2017 21:33:46 +0000 (22:33 +0100)]
'update'

7 years agoadd .nbstripout
Benjamin Auder [Mon, 6 Mar 2017 19:50:09 +0000 (20:50 +0100)]
add .nbstripout

7 years agochange submodules
Benjamin Auder [Mon, 6 Mar 2017 19:47:46 +0000 (20:47 +0100)]
change submodules

7 years agoremove .ppam-mpi submodule
Benjamin Auder [Mon, 6 Mar 2017 19:31:48 +0000 (20:31 +0100)]
remove .ppam-mpi submodule

7 years agoFix unit tests
Benjamin Auder [Mon, 6 Mar 2017 19:18:22 +0000 (20:18 +0100)]
Fix unit tests

7 years agoprepare converter for DB extracts datasets
Benjamin Auder [Mon, 6 Mar 2017 11:50:02 +0000 (12:50 +0100)]
prepare converter for DB extracts datasets

7 years ago'update'
Benjamin Auder [Mon, 6 Mar 2017 11:03:53 +0000 (12:03 +0100)]
'update'

7 years agopreprocessing
Benjamin Auder [Mon, 6 Mar 2017 09:02:03 +0000 (10:02 +0100)]
preprocessing

7 years agode_serialize works. Variables names improved. Code beautified. TODO: clustering tests
Benjamin Auder [Mon, 6 Mar 2017 01:00:29 +0000 (02:00 +0100)]
de_serialize works. Variables names improved. Code beautified. TODO: clustering tests

7 years agothrow away old code, prepare tests
Benjamin Auder [Sun, 5 Mar 2017 16:30:11 +0000 (17:30 +0100)]
throw away old code, prepare tests

7 years agocomplete first draft of package
Benjamin Auder [Sun, 5 Mar 2017 14:36:26 +0000 (15:36 +0100)]
complete first draft of package

7 years agobefore computeSynchrones
Benjamin Auder [Sat, 4 Mar 2017 23:03:37 +0000 (00:03 +0100)]
before computeSynchrones

7 years agowith parallel::export
Benjamin Auder [Sat, 4 Mar 2017 18:00:59 +0000 (19:00 +0100)]
with parallel::export

7 years agoexport vars to nodes
Benjamin Auder [Fri, 3 Mar 2017 14:29:08 +0000 (15:29 +0100)]
export vars to nodes

7 years agotoward better ID+coeffs management
Benjamin Auder [Fri, 3 Mar 2017 11:44:20 +0000 (12:44 +0100)]
toward better ID+coeffs management

7 years ago'update'
Benjamin Auder [Fri, 3 Mar 2017 11:31:15 +0000 (12:31 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Fri, 3 Mar 2017 09:59:16 +0000 (10:59 +0100)]
'update'

7 years agorenaming, refactoring
Benjamin Auder [Mon, 20 Feb 2017 17:31:45 +0000 (18:31 +0100)]
renaming, refactoring

7 years agoreorganize folder
Benjamin Auder [Mon, 20 Feb 2017 08:51:29 +0000 (09:51 +0100)]
reorganize folder

7 years agoset final draft for package
Benjamin Auder [Sun, 19 Feb 2017 23:37:33 +0000 (00:37 +0100)]
set final draft for package

7 years agofinish simplifications on stage2.R
Benjamin Auder [Sat, 18 Feb 2017 13:26:42 +0000 (14:26 +0100)]
finish simplifications on stage2.R

7 years agosimplify stage2.R
Benjamin Auder [Sat, 18 Feb 2017 12:12:01 +0000 (13:12 +0100)]
simplify stage2.R

7 years ago'update'
Benjamin Auder [Fri, 17 Feb 2017 11:09:07 +0000 (12:09 +0100)]
'update'

7 years agoadd clustering method in biblio
Benjamin Auder [Wed, 15 Feb 2017 15:25:23 +0000 (16:25 +0100)]
add clustering method in biblio

7 years agofix stage2.R
Benjamin Auder [Wed, 8 Feb 2017 12:08:07 +0000 (13:08 +0100)]
fix stage2.R

7 years agoavancée sur compréhension de epclust/R/stage2.R
Benjamin Auder [Tue, 31 Jan 2017 15:17:55 +0000 (16:17 +0100)]
avancée sur compréhension de epclust/R/stage2.R

7 years agoprepared step2.R for first tests (old code, reindented, all in one file)
Benjamin Auder [Tue, 31 Jan 2017 10:55:51 +0000 (11:55 +0100)]
prepared step2.R for first tests (old code, reindented, all in one file)

7 years agoupdate code for stage 2 in epclust
Benjamin Auder [Tue, 31 Jan 2017 02:27:43 +0000 (03:27 +0100)]
update code for stage 2 in epclust

7 years ago'update'
Benjamin Auder [Mon, 30 Jan 2017 17:52:10 +0000 (18:52 +0100)]
'update'

7 years agofix comment on initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 15:19:44 +0000 (16:19 +0100)]
fix comment on initialize.sh

7 years agosomewhat unroll the code in WER distances computations
Benjamin Auder [Mon, 30 Jan 2017 12:35:25 +0000 (13:35 +0100)]
somewhat unroll the code in WER distances computations

7 years agoadd git-fat-pull to pre-push hook via initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 01:33:17 +0000 (02:33 +0100)]
add git-fat-pull to pre-push hook via initialize.sh

7 years agocomment on initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 01:05:09 +0000 (02:05 +0100)]
comment on initialize.sh

7 years agofix initialize script (pre-push hook must be executable)
Benjamin Auder [Mon, 30 Jan 2017 00:50:06 +0000 (01:50 +0100)]
fix initialize script (pre-push hook must be executable)

7 years agore-add modules as hidden folders
Benjamin Auder [Mon, 30 Jan 2017 00:33:26 +0000 (01:33 +0100)]
re-add modules as hidden folders

7 years agotemporarily remove modules
Benjamin Auder [Mon, 30 Jan 2017 00:29:35 +0000 (01:29 +0100)]
temporarily remove modules

7 years agoadd initialize.sh script to be run after cloning
Benjamin Auder [Mon, 30 Jan 2017 00:18:59 +0000 (01:18 +0100)]
add initialize.sh script to be run after cloning

7 years agoreorganize .gitignore files
Benjamin Auder [Mon, 30 Jan 2017 00:18:25 +0000 (01:18 +0100)]
reorganize .gitignore files

7 years agodrop potential jupyter usage for R package vignette
Benjamin Auder [Mon, 30 Jan 2017 00:17:18 +0000 (01:17 +0100)]
drop potential jupyter usage for R package vignette

7 years agoadd PDF files through git-fat filters
Benjamin Auder [Mon, 30 Jan 2017 00:15:57 +0000 (01:15 +0100)]
add PDF files through git-fat filters

7 years agoadd submodules ppam-mpi and git-fat
Benjamin Auder [Mon, 30 Jan 2017 00:14:20 +0000 (01:14 +0100)]
add submodules ppam-mpi and git-fat

7 years agouse git fat
Benjamin Auder [Sun, 29 Jan 2017 17:58:10 +0000 (18:58 +0100)]
use git fat