+ require(valse)
+ params = valse:::basicInitParameters(n, p, m, k)
+ xy = valse:::generateXYdefault(n, p, m, k)
+
+ testFolder = "../data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
+ #save inputs
+ write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(glambda), paste(testFolder,"glambda",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(seuil), paste(testFolder,"seuil",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(A1), paste(testFolder,"A1",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(A2), paste(testFolder,"A2",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""),
+ row.names=F, col.names=F)
+
+ res = constructionModelesLassoMLE(
+ params$phiInit,params$rhoInit,params$piInit,params$gamInit,
+ mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2)
+