src/test/generate_test_data/generateRunSaveTest_selectiontotale.R

   1 generateRunSaveTest_selectiontotale= function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
   2     glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
   3 {
   4   testFolder = "data/"
   5   dir.create(testFolder, showWarnings=FALSE, mode="0755")
   6
   7     require(valse)
   8   params = valse:::basic_Init_Parameters(n, p, m, k)
   9   io = valse:::generateIOdefault(n, p, m, k)
  10
  11   #save inputs
  12   write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  13         row.names=F, col.names=F)
  14   write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  15         row.names=F, col.names=F)
  16   write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  17         row.names=F, col.names=F)
  18   write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  19         row.names=F, col.names=F)
  20   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  21         row.names=F, col.names=F)
  22   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  23         row.names=F, col.names=F)
  24   write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  25         row.names=F, col.names=F)
  26   write.table(as.double(glambda), paste(testFolder,"lambda",sep=""),
  27         row.names=F, col.names=F)
  28   write.table(as.double(io$X), paste(testFolder,"X",sep=""),
  29         row.names=F, col.names=F)
  30   write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
  31         row.names=F, col.names=F)
  32   write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  33         row.names=F, col.names=F)
  34   write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  35         row.names=F, col.names=F)
  36
  37   res = selectiontotale(params$phiInit,params$rhoInit,params$piInit,params$gamInit,
  38         mini,maxi,gamma,glambda,io$X,io$Y,seuil, tau)
  39
  40   #save output
  41   write.table(as.double(res$A1), paste(testFolder,"A1",sep=""), row.names=F, col.names=F)
  42   write.table(as.double(res$A2), paste(testFolder,"A2",sep=""), row.names=F, col.names=F)
  43   write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
  44   write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
  45 }