src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R

   1 generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, k=3, L=12, mini=5,
   2     maxi=10, gamma=1.0, rangmin=3, rangmax=6)
   3 {
   4   tau = 1e-6
   5   pi = matrix(1./k, nrow=k, ncol=L)
   6   rho = array(dim=c(m,m,k,L))
   7   for (l in 1:L)
   8     {
   9     for (r in 1:k)
  10       rho[,,r,l] = diag(1,m)
  11   }
  12   A1 = matrix(seq_len(p), nrow=p, ncol=L)
  13     require(valse)
  14   xy = valse:::generateXYdefault(n, p, m, k)
  15
  16   testFolder = "data/"
  17   dir.create(testFolder, showWarnings=FALSE, mode="0755")
  18   #save inputs
  19   write.table(as.double(pi), paste(testFolder,"pi",sep=""),
  20         row.names=F, col.names=F)
  21   write.table(as.double(rho),paste(testFolder,"rho",sep=""),
  22         row.names=F, col.names=F)
  23   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  24         row.names=F, col.names=F)
  25   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  26         row.names=F, col.names=F)
  27   write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  28         row.names=F, col.names=F)
  29   write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  30         row.names=F, col.names=F)
  31   write.table(as.double(tau),paste(testFolder,"tau",sep=""),
  32         row.names=F, col.names=F)
  33   write.table(as.double(A1),paste(testFolder,"A1",sep=""),
  34         row.names=F, col.names=F)
  35   write.table(as.integer(rangmin),paste(testFolder,"rangmin",sep=""),
  36         row.names=F, col.names=F)
  37   write.table(as.integer(rangmax),paste(testFolder,"rangmax",sep=""),
  38         row.names=F, col.names=F)
  39   write.table(as.integer(c(n,p,m,k,L)),paste(testFolder,"dimensions",sep=""),
  40         row.names=F, col.names=F)
  41
  42   res = constructionModelesLassoRank(pi,rho,mini,maxi,xy$X,xy$Y,tau,A1,rangmin,rangmax)
  43
  44   #save output
  45   write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
  46   write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
  47 }