src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R

   1 generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, L=12, mini=5,
   2     maxi=10, gamma=1.0, rangmin=3, rangmax=6)
   3 {
   4   testFolder = "data/"
   5   dir.create(testFolder, showWarnings=FALSE, mode="0755")
   6
   7   tau = 1e-6
   8   pi = matrix(0, k,L)
   9   for(i in 1:L){
  10     pi[,i] = rep(1.0/k, k)
  11   }
  12   rho = array(0, dim=c(m,m,k,L))
  13   for(l in 1:L){
  14     for(r in 1:k){
  15       rho[,,r,l] = diag(1,m)
  16     }
  17   }
  18     require(valse)
  19   io = valse:::generateIOdefault(n, p, m, k)
  20   A1 = matrix(0,p,L)
  21   for(i in 1:L){
  22     A1[,i] = seq(1,p)
  23   }
  24
  25   #save inputs
  26   write.table(as.double(rho),paste(testFolder,"rho",sep=""),
  27         row.names=F, col.names=F)
  28   write.table(as.double(pi), paste(testFolder,"pi",sep=""),
  29         row.names=F, col.names=F)
  30   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  31         row.names=F, col.names=F)
  32   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  33         row.names=F, col.names=F)
  34   write.table(as.double(io$X), paste(testFolder,"X",sep=""),
  35         row.names=F, col.names=F)
  36   write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
  37         row.names=F, col.names=F)
  38   write.table(as.double(tau),paste(testFolder,"tau",sep=""),
  39         row.names=F, col.names=F)
  40   write.table(as.double(A1),paste(testFolder,"A1",sep=""),
  41         row.names=F, col.names=F)
  42   write.table(as.integer(rangmin),paste(testFolder,"rangmin",sep=""),
  43         row.names=F, col.names=F)
  44   write.table(as.integer(rangmax),paste(testFolder,"rangmax",sep=""),
  45         row.names=F, col.names=F)
  46   write.table(as.integer(c(n,p,m,k)),paste(testFolder,"dimensions",sep=""),
  47         row.names=F, col.names=F)
  48
  49   res = constructionModelesLassoRank(pi,rho,mini,maxi,X,Y,tau,A1,rangmin,rangmax)
  50
  51   #save output
  52   write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
  53   write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
  54 }