src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R

   1 generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, L=12, mini=5, maxi=10, gamma=1.0, rangmin=3, rangmax=6){
   2   testFolder = "data/"
   3   dir.create(testFolder, showWarnings=FALSE, mode="0755")
   4   delimiter = " "
   5
   6   tau = 1e-6
   7
   8
   9   pi = matrix(0, k,L)
  10   for(i in 1:L){
  11     pi[,i] = rep(1.0/k, k)
  12   }
  13   rho = array(0, dim=c(m,m,k,L))
  14   for(l in 1:L){
  15     for(r in 1:k){
  16       rho[,,r,l] = diag(1,m)
  17     }
  18   }
  19   #Generate X and Y
  20     require(valse)
  21   generateIOdef = valse:::generateIOdefault(n, p, m, k)
  22
  23   A1 = matrix(0,p,L)
  24   for(i in 1:L){
  25     A1[,i] = seq(1,p)
  26   }
  27   #save inputs
  28   write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter)
  29   write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter)
  30   write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
  31   write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
  32   write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter)
  33   write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter)
  34   write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
  35   write.table(paste(testFolder,"A1",sep=""), A1, sep=delimiter)
  36   write.table(paste(testFolder,"rangmin",sep=""), rangmin, sep=delimiter)
  37   write.table(paste(testFolder,"rangmax",sep=""), rangmax, sep=delimiter)
  38   write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
  39
  40   construct = constructionModelesLassoRank(pi,rho,mini,maxi,X,Y,tau,A1,rangmin,rangmax))
  41
  42   #save output
  43   write.table(paste(testFolder,"phi",sep=""), construct$phi, sep=delimiter)
  44   write.table(paste(testFolder,"lvraisemblance",sep=""), construct$lvraisemblance, sep=delimiter)
  45
  46 }