projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| f1b906da BG |
1 | generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){ |
| 2 | testFolder = "data/" | |
| 3 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
| 4 | delimiter = " " | |
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5 | |
| 6 | #Generate phiInit,piInit,... | |
| f1b906da | 7 | params = basicInitParameters(n, p, m, k) |
| dc425209 | 8 | |
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9 | #save inputs |
| 10 | write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter) | |
| 11 | write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter) | |
| 12 | write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter) | |
| 13 | write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter) | |
| 14 | write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter) | |
| 15 | write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter) | |
| 16 | write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter) | |
| 17 | write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter) | |
| 18 | write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter) | |
| 19 | write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter) | |
| 20 | write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter) | |
| 21 | write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter) | |
| 22 | ||
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23 | A2 = array(0, dim=c(p, m+1, L)) |
| 24 | A1 = array(0, dim=c(p, m+1, L)) | |
| 25 | for(i in 1:L){ | |
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26 | A2[,1,i] = seq(1,p) |
| 27 | A2[,2,i] = seq(1,5) | |
| 28 | A1[,1, i] = seq(1,p) | |
| 29 | A1[,2,i] = seq(1,5) | |
| dc425209 | 30 | } |
| dc425209 | 31 | |
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32 | #Generate X and Y |
| 33 | generateIOdef = generateIOdefault(n, p, m, k) | |
| 34 | construct_LME = constructionModelesLassoMLE(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil,tau,A1,A2) | |
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35 | phi = construct_LME$phi |
| 36 | rho = construct_LME$rho | |
| 37 | pi = construct_LME$pi | |
| 38 | lvraisemblance = construct_LME$lvraisemblance | |
| 39 | ||
| 40 | #save output | |
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41 | write.table(paste(testFolder,"phi",sep=""), construct_LME$phi, sep=delimiter) |
| 42 | write.table(paste(testFolder,"rho",sep=""), construct_LME$rho, sep=delimiter) | |
| 43 | write.table(paste(testFolder,"pi",sep=""), construct_LME$pi, sep=delimiter) | |
| 44 | write.table(paste(testFolder,"lvraisemblance",sep=""), construct_LME$lvraisemblance, sep=delimiter) | |
| dc425209 | 45 | } |