generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){ testFolder = "data/" dir.create(testFolder, showWarnings=FALSE, mode="0755") delimiter = " " #Generate phiInit,piInit,... params = basicInitParameters(n, p, m, k) #save inputs write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter) write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter) write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter) write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter) write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter) write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter) write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter) write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter) write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter) write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter) write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter) write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter) A2 = array(0, dim=c(p, m+1, L)) A1 = array(0, dim=c(p, m+1, L)) for(i in 1:L){ A2[,1,i] = seq(1,p) A2[,2,i] = seq(1,5) A1[,1, i] = seq(1,p) A1[,2,i] = seq(1,5) } #Generate X and Y generateIOdef = generateIOdefault(n, p, m, k) construct_LME = constructionModelesLassoMLE(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil,tau,A1,A2) phi = construct_LME$phi rho = construct_LME$rho pi = construct_LME$pi lvraisemblance = construct_LME$lvraisemblance #save output write.table(paste(testFolder,"phi",sep=""), construct_LME$phi, sep=delimiter) write.table(paste(testFolder,"rho",sep=""), construct_LME$rho, sep=delimiter) write.table(paste(testFolder,"pi",sep=""), construct_LME$pi, sep=delimiter) write.table(paste(testFolder,"lvraisemblance",sep=""), construct_LME$lvraisemblance, sep=delimiter) }