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Add a number_of_cores parameter for OpenMP // in Compute_Omega
[morpheus.git]
/
reports
/
run_time_cl.sh
diff --git
a/reports/run_time_cl.sh
b/reports/run_time_cl.sh
index
3055072
..
943d7c1
100644
(file)
--- a/
reports/run_time_cl.sh
+++ b/
reports/run_time_cl.sh
@@
-1,15
+1,19
@@
#!/bin/bash
#!/bin/bash
-#PBS -l nodes=1:ppn=16,mem=8gb,pmem=512mb
-#PBS -j oe
-
-#PBS -o .output
+#$ -N morpheus
+#$ -wd /workdir2/auder/morpheus/reports
+#$ -m abes
+#$ -M benjamin@auder.net
+#$ -pe make 50
rm -f .output
rm -f .output
-
-WORKDIR=/workdir2/auder/morpheus/reports
-cd $WORKDIR
+#$ -o .output
+#$ -j y
module load R
module load R
+N=1000
+nc=50
+link="logit"
+
# arg --vanilla maybe possible on cluster
# arg --vanilla maybe possible on cluster
-R --slave --args N=
1000 nc=16 link=logit
<timings.R >out 2>&1
+R --slave --args N=
$N nc=$nc link=$link
<timings.R >out 2>&1