Fix script for cluster + a few other fixes

[morpheus.git] / reports / run_accu_cl.sh

diff --git a/reports/run_accu_cl.sh b/reports/run_accu_cl.sh
index 50b2844..6d6ac21 100644 (file)
--- a/reports/run_accu_cl.sh
+++ b/reports/run_accu_cl.sh
@@ -1,27 +1,37 @@
 #!/bin/bash
 
-#PBS -l nodes=1:ppn=15,mem=8gb,pmem=512mb
-#PBS -j oe
-
-#PBS -o .output
+#$ -N morpheus
+#$ -m abes
+#$ -M benjamin@auder.net
+#$ -pe make 5
+#$ -l h_vmem=1G
+#$ -j y
+#$ -o .output
 rm -f .output
 
 WORKDIR=/workdir2/auder/morpheus/reports
 cd $WORKDIR
 
-module load R
+module load R/3.6.0
+
+N=1000
+n=1e5
+nc=50
+
+link=logit
+# and disable d=20 to run faster
 
 # arg --vanilla maybe possible on cluster
-for d in 2 5 10 20; do
-       for link in "logit" "probit"; do
-               R --slave --args N=1000 n=1e5 nc=15 d=$d link=$link <accuracy.R >out$d$link 2>&1
-       done
+for d in 2 5 10; do
+       #for link in "logit" "probit"; do
+               R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
+       #done
 done
 
 #for d in 2 5; do
 #      for n in 5000 10000 100000 500000 1000000; do
 #              for link in "logit" "probit"; do
-#                      R --slave --args N=1000 n=$n nc=64 d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
+#                      R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
 #              done
 #      done
 #done