Add a number_of_cores parameter for OpenMP // in Compute_Omega

[morpheus.git] / reports / run_accu_cl.sh

diff --git a/reports/run_accu_cl.sh b/reports/run_accu_cl.sh
index d1d8e37..39ef317 100644 (file)
--- a/reports/run_accu_cl.sh
+++ b/reports/run_accu_cl.sh
@@ -1,19 +1,23 @@
 #!/bin/bash
 
-#PBS -l nodes=1:ppn=15,mem=8gb,pmem=512mb
-#PBS -j oe
-
-#PBS -o .output
+#$ -N morpheus
+#$ -wd /workdir2/auder/morpheus/reports
+#$ -m abes
+#$ -M benjamin@auder.net
+#$ -pe make 50
 rm -f .output
+#$ -o .output
+#$ -j y
 
-WORKDIR=/workdir2/auder/morpheus/reports
-cd $WORKDIR
+module load R/3.6.1
 
-module load R
+N=100
+nc=50
 
-# arg --vanilla maybe possible on cluster
-for d in 2 5 10 20; do
-       for link in "logit" "probit"; do
-               R --slave --args N=1000 n=1e5 nc=15 d=$d link=$link <accuracy.R >out$d$link 2>&1
+for n in "5000" "10000" "100000" "500000" "1000000"; do
+       for d in 2 5 10; do
+               for link in "logit" "probit"; do
+                       R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_${n}_${link}_${d} 2>&1
+               done
        done
 done