Add a number_of_cores parameter for OpenMP // in Compute_Omega

[morpheus.git] / reports / run_accu_cl.sh

diff --git a/reports/run_accu_cl.sh b/reports/run_accu_cl.sh
index 6d6ac21..39ef317 100644 (file)
--- a/reports/run_accu_cl.sh
+++ b/reports/run_accu_cl.sh
@@ -1,37 +1,23 @@
 #!/bin/bash
 
 #$ -N morpheus
+#$ -wd /workdir2/auder/morpheus/reports
 #$ -m abes
 #$ -M benjamin@auder.net
-#$ -pe make 5
-#$ -l h_vmem=1G
-#$ -j y
-#$ -o .output
+#$ -pe make 50
 rm -f .output
+#$ -o .output
+#$ -j y
 
-WORKDIR=/workdir2/auder/morpheus/reports
-cd $WORKDIR
-
-module load R/3.6.0
+module load R/3.6.1
 
-N=1000
-n=1e5
+N=100
 nc=50
 
-link=logit
-# and disable d=20 to run faster
-
-# arg --vanilla maybe possible on cluster
-for d in 2 5 10; do
-       #for link in "logit" "probit"; do
-               R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
-       #done
+for n in "5000" "10000" "100000" "500000" "1000000"; do
+       for d in 2 5 10; do
+               for link in "logit" "probit"; do
+                       R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_${n}_${link}_${d} 2>&1
+               done
+       done
 done
-
-#for d in 2 5; do
-#      for n in 5000 10000 100000 500000 1000000; do
-#              for link in "logit" "probit"; do
-#                      R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
-#              done
-#      done
-#done