Error when K > d for computeMu and optimParams
[morpheus.git] / reports / printResults.R
CommitLineData
07f2d045 1# NOTE: discard top 2% of highest values
c181c2c3
BA
2prms <- function(name, idx)
3{
4 load(name)
5 d <- nrow(mr[[1]][[1]])-2
07f2d045
BA
6 if (idx > length(mr))
7 mr[[idx]] = mr[[1]]
c181c2c3 8 p <- colMeans(do.call(rbind, lapply(mr[[idx]], function(m) m[1,])))
07f2d045 9 bVects <- lapply(mr[[idx]], function(m) m[2+d,])
2989133a 10 q98 <- Inf #quantile(sapply(bVects, function(bv) sum(abs(bv))), 0.98)
07f2d045
BA
11 bFiltered <- Filter(function(bv) sum(abs(bv)) < q98, bVects)
12 b <- colMeans(do.call(rbind, bFiltered))
13 betaMatrices <- lapply(mr[[idx]], function(m) m[2:(d+1),])
2989133a 14 q98 <- Inf #quantile(sapply(betaMatrices, function(bm) sum(abs(bm))), 0.98)
07f2d045
BA
15 bmFiltered <- Filter(function(bm) sum(abs(bm)) < q98, betaMatrices)
16 beta <- (1/length(bmFiltered)) * Reduce("+", bmFiltered)
c181c2c3
BA
17 list(p, beta, b, mr_params)
18}
19
07f2d045 20pprms <- function(link, prefix="./")
c181c2c3 21{
07f2d045
BA
22 toprint <- matrix(nrow=0, ncol=13) #13=1+2+1 + 1+2+1 + 1+3+1
23 for (n in c("5000", "10000", "100000", "500000", "1000000"))
c181c2c3 24 {
38c65767
BA
25 for (method in 1:2)
26 {
07f2d045 27 row <- c()
c181c2c3
BA
28 for (d in c(2,5,10))
29 {
07f2d045 30 name <- paste0(prefix, "res_", n, "_", d, "_", link, ".RData")
c181c2c3 31 params <- prms(name, method)
07f2d045 32 row <- c( row,
c181c2c3
BA
33 sum(abs(params[[1]] - params[[4]]$p)),
34 colSums(abs(params[[2]] - params[[4]]$beta)),
07f2d045 35 sum(abs(params[[3]] - params[[4]]$b)) )
c181c2c3 36 }
07f2d045 37 toprint <- rbind(toprint, row)
38c65767 38 }
c181c2c3 39 }
07f2d045
BA
40 print(formatC(toprint, format="e", digits=1)) #for reporting
41 return (toprint)
c181c2c3 42}