save state: wrong idea for indices repartition

[epclust.git] / epclust / tests / testthat / test.de_serialize.R

diff --git a/epclust/tests/testthat/test.de_serialize.R b/epclust/tests/testthat/test.de_serialize.R
index 8403e6d..25f2c2b 100644 (file)
--- a/epclust/tests/testthat/test.de_serialize.R
+++ b/epclust/tests/testthat/test.de_serialize.R
@@ -2,11 +2,11 @@ context("de_serialize")
 
 test_that("serialization + getDataInFile retrieve original data / from matrix",
 {
-       data_bin_file = "/tmp/epclust_test_m.bin"
+       data_bin_file = ".epclust_test_m.bin"
        unlink(data_bin_file)
 
-       #dataset 200 lignes / 30 columns
-       data_ascii = matrix(runif(200*30,-10,10),ncol=30)
+       #dataset 200 cols / 30 rows
+       data_ascii = matrix(runif(200*30,-10,10),nrow=30)
        nbytes = 4 #lead to a precision of 1e-7 / 1e-8
        endian = "little"
 
@@ -16,7 +16,7 @@ test_that("serialization + getDataInFile retrieve original data / from matrix",
        for (indices in list(c(1,3,5), 3:13, c(5,20,50), c(75,130:135), 196:200))
        {
                data_lines = getDataInFile(indices, data_bin_file, nbytes, endian)
-               expect_equal(data_lines, data_ascii[indices,], tolerance=1e-6)
+               expect_equal(data_lines, data_ascii[,indices], tolerance=1e-6)
        }
        unlink(data_bin_file)
 
@@ -27,44 +27,44 @@ test_that("serialization + getDataInFile retrieve original data / from matrix",
        for (indices in list(c(1,3,5), 3:13, c(5,20,50), c(75,130:135), 196:200))
        {
                data_lines = getDataInFile(indices, data_bin_file, nbytes, endian)
-               expect_equal(data_lines, data_ascii[indices,], tolerance=1e-6)
+               expect_equal(data_lines, data_ascii[,indices], tolerance=1e-6)
        }
        unlink(data_bin_file)
 })
 
 test_that("serialization + transform + getDataInFile retrieve original transforms",
 {
-       data_bin_file = "/tmp/epclust_test_t.bin"
+       data_bin_file = ".epclust_test_t.bin"
        unlink(data_bin_file)
 
-       #dataset 200 lignes / 30 columns
-       data_ascii = matrix(runif(200*30,-10,10),ncol=30)
+       #dataset 200 cols / 30 rows
+       data_ascii = matrix(runif(200*30,-10,10),nrow=30)
        nbytes = 8
        endian = "little"
 
        binarize(data_ascii, data_bin_file, 500, ",", nbytes, endian)
        # Serialize transformation (just compute range) into a new binary file
-       trans_bin_file = "/tmp/epclust_test_t_trans.bin"
+       trans_bin_file = ".epclust_test_t_trans.bin"
        unlink(trans_bin_file)
        getSeries = function(inds) getDataInFile(inds, data_bin_file, nbytes, endian)
-       binarizeTransform(getSeries, function(series) t(apply(series, 1, range)),
+       binarizeTransform(getSeries, function(series) apply(series, 2, range),
                trans_bin_file, 250, nbytes, endian)
        unlink(data_bin_file)
        expect_equal(file.info(trans_bin_file)$size, 2*nrow(data_ascii)*nbytes+8)
        for (indices in list(c(1,3,5), 3:13, c(5,20,50), c(75,130:135), 196:200))
        {
-               trans_lines = getDataInFile(indices, trans_bin_file, nbytes, endian)
-               expect_equal(trans_lines, t(apply(data_ascii[indices,],1,range)), tolerance=1e-6)
+               trans_cols = getDataInFile(indices, trans_bin_file, nbytes, endian)
+               expect_equal(trans_cols, apply(data_ascii[indices,],2,range), tolerance=1e-6)
        }
        unlink(trans_bin_file)
 })
 
 test_that("serialization + getDataInFile retrieve original data / from connection",
 {
-       data_bin_file = "/tmp/epclust_test_c.bin"
+       data_bin_file = ".epclust_test_c.bin"
        unlink(data_bin_file)
 
-       #dataset 300 lignes / 50 columns
+       #dataset 300 cols / 50 rows
        data_csv = system.file("testdata","de_serialize.csv",package="epclust")
        nbytes = 8
        endian = "big"
@@ -76,8 +76,8 @@ test_that("serialization + getDataInFile retrieve original data / from connectio
        for (indices in list(c(1,3,5), 3:13, c(5,20,50), c(75,130:135), 196:200))
        {
                #HACK: as.matrix(as.data.frame( )) required to match (ref) data structure
-               data_lines = as.matrix(as.data.frame( getDataInFile(indices,data_bin_file,nbytes,endian) ))
-               expect_equal(data_lines, data_ascii[indices,])
+               data_cols = as.matrix(as.data.frame( getDataInFile(indices,data_bin_file,nbytes,endian) ))
+               expect_equal(data_cols, data_ascii[,indices])
        }
        unlink(data_bin_file)
 
@@ -87,8 +87,8 @@ test_that("serialization + getDataInFile retrieve original data / from connectio
        expect_equal(file.info(data_bin_file)$size, 300*50*8+8)
        for (indices in list(c(1,3,5), 3:13, c(5,20,50), c(75,130:135), 196:200))
        {
-               data_lines = as.matrix(as.data.frame( getDataInFile(indices,data_bin_file,nbytes,endian) ))
-               expect_equal(data_lines, data_ascii[indices,])
+               data_cols = as.matrix(as.data.frame( getDataInFile(indices,data_bin_file,nbytes,endian) ))
+               expect_equal(data_cols, data_ascii[,indices])
        }
        unlink(data_bin_file)
        #close(data_con) --> done in binarize()