Fix default weights, fix reporting scripts

[morpheus.git] / reports / test.R

diff --git a/reports/test.R b/reports/test.R
deleted file mode 100644 (file)
index 2ce9a44..0000000
--- a/reports/test.R
+++ /dev/null
@@ -1,58 +0,0 @@
-library(morpheus)
-morph <- function(fargs) {
-       K <- fargs$optargs$K
-       M <- computeMoments(fargs$X, fargs$Y)
-       fargs$optargs$M <- M
-       mu <- computeMu(fargs$X, fargs$Y, fargs$optargs)
-       res2 <- NULL
-       tryCatch({
-               op <- optimParams(K,link,fargs$optargs)
-               x_init <- list(p=rep(1/K,K-1), beta=mu, b=rep(0,K))
-               res2 <- do.call(rbind, op$run(x_init))
-       }, error = function(e) {
-               res2 <- NA
-       })
-       res2
-}
-
-#model = binomial; default values:
-link = "probit"
-N <- 10
-d <- 2
-n <- 1e4
-ncores <- 1
-
-if (d == 2) {
-       K <- 2
-       p <- .5
-       b <- c(-.2, .5)
-       beta <- matrix( c(1,-2, 3,1), ncol=K )
-} else if (d == 5) {
-       K <- 2
-       p <- .5
-       b <- c(-.2, .5)
-       beta <- matrix( c(1,2,-1,0,3, 2,-3,0,1,0), ncol=K )
-} else if (d == 10) {
-       K <- 3
-       p <- c(.3, .3)
-       b <- c(-.2, 0, .5)
-       beta <- matrix( c(1,2,-1,0,3,4,-1,-3,0,2, 2,-3,0,1,0,-1,-4,3,2,0, -1,1,3,-1,0,0,2,0,1,-2), ncol=K )
-} else if (d == 20) {
-       K <- 3
-       p <- c(.3, .3)
-       b <- c(-.2, 0, .5)
-       beta <- matrix( c(1,2,-1,0,3,4,-1,-3,0,2,2,-3,0,1,0,-1,-4,3,2,0, -1,1,3,-1,0,0,2,0,1,-2,1,2,-1,0,3,4,-1,-3,0,2, 2,-3,0,1,0,-1,-4,3,2,0,1,1,2,2,-2,-2,3,1,0,0), ncol=K )
-}
-
-fargs = list(n=n, p=p, beta=beta, b=b)
-fargs$optargs = list(link=link)
-
-io = generateSampleIO(fargs$n, fargs$p, fargs$beta, fargs$b, fargs$optargs$link)
-fargs$X = io$X
-fargs$Y = io$Y
-fargs$optargs$K = ncol(fargs$beta)
-fargs$optargs$M = computeMoments(io$X,io$Y)
-
-res2 <- morph(fargs)
-
-save("res2", file="test.RData")