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Fix script for cluster + a few other fixes
[morpheus.git]
/
reports
/
run_accu_cl.sh
diff --git
a/reports/run_accu_cl.sh
b/reports/run_accu_cl.sh
index
11bb5e0
..
6d6ac21
100644
(file)
--- a/
reports/run_accu_cl.sh
+++ b/
reports/run_accu_cl.sh
@@
-1,19
+1,37
@@
#!/bin/bash
#!/bin/bash
-#PBS -l nodes=1:ppn=15,mem=8gb,pmem=512mb
-#PBS -j oe
-
-#PBS -o .output
+#$ -N morpheus
+#$ -m abes
+#$ -M benjamin@auder.net
+#$ -pe make 5
+#$ -l h_vmem=1G
+#$ -j y
+#$ -o .output
rm -f .output
WORKDIR=/workdir2/auder/morpheus/reports
cd $WORKDIR
rm -f .output
WORKDIR=/workdir2/auder/morpheus/reports
cd $WORKDIR
-module load R
+module load R/3.6.0
+
+N=1000
+n=1e5
+nc=50
+
+link=logit
+# and disable d=20 to run faster
# arg --vanilla maybe possible on cluster
# arg --vanilla maybe possible on cluster
-for d in
10 2
0; do
- for link in "logit" "probit"; do
- R --slave --args N=
1000 n=1e5 nc=15 d=$d link=$link <accuracy.R >out$d$link
2>&1
- done
+for d in
2 5 1
0; do
+
#
for link in "logit" "probit"; do
+ R --slave --args N=
$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d
2>&1
+
#
done
done
done
+
+#for d in 2 5; do
+# for n in 5000 10000 100000 500000 1000000; do
+# for link in "logit" "probit"; do
+# R --slave --args N=$N n=$n nc=$nc d=$d link=$link <accuracy.R >out_$n$link$d 2>&1
+# done
+# done
+#done