Folder reorganization

[valse.git] / test / generate_test_data / generateRunSaveTest_EMGrank.R

diff --git a/test/generate_test_data/generateRunSaveTest_EMGrank.R b/test/generate_test_data/generateRunSaveTest_EMGrank.R
new file mode 100644 (file)
index 0000000..99da9bc
--- /dev/null
+++ b/test/generate_test_data/generateRunSaveTest_EMGrank.R
@@ -0,0 +1,41 @@
+source("EMGrank.R")
+
+generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
+       rank = c(1,2,4))
+{
+  tau = 1e-6
+  pi = rep(1.0/k, k)
+  rho = array(dim=c(m,m,k))
+  for(i in 1:k)
+    rho[,,i] = diag(1,m)
+       require(valse)
+  xy = valse:::generateXYdefault(n, p, m, k)
+
+  testFolder = "../data/"
+  dir.create(testFolder, showWarnings=FALSE, mode="0755")
+  #save inputs
+  write.table(as.double(rho), paste(testFolder,"rho",sep=""),
+               row.names=F, col.names=F)
+       write.table(as.double(pi), paste(testFolder,"pi",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
+               row.names=F, col.names=F)
+  write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+               row.names=F, col.names=F)
+
+  res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
+
+  #save output
+  write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
+  write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
+}