Add 'fast' argument to select C code or R code

[valse.git] / test / generate_test_data / generateRunSaveTest_EMGrank.R

diff --git a/test/generate_test_data/generateRunSaveTest_EMGrank.R b/test/generate_test_data/generateRunSaveTest_EMGrank.R
deleted file mode 100644 (file)
index 14c1b2a..0000000
--- a/test/generate_test_data/generateRunSaveTest_EMGrank.R
+++ /dev/null
@@ -1,42 +0,0 @@
-source("EMGrank.R")
-source("helper.R")
-
-generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
-       rank = c(1,2,4))
-{
-  tau = 1e-6
-  pi = rep(1.0/k, k)
-  rho = array(dim=c(m,m,k))
-  for(i in 1:k)
-    rho[,,i] = diag(1,m)
-       require(valse)
-  xy = generateXYdefault(n, p, m, k)
-
-  testFolder = "../data/"
-  dir.create(testFolder, showWarnings=FALSE, mode="0755")
-  #save inputs
-  write.table(as.double(rho), paste(testFolder,"rho",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(pi), paste(testFolder,"pi",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(tau), paste(testFolder,"tau",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
-               row.names=F, col.names=F)
-
-  res = EMGrank_R(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
-
-  #save output
-  write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
-  write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
-}