no need to generate random IO params: migrate in test. Add roxygen2 NAMESPACE-generat...

[valse.git] / test / generate_test_data / generateRunSaveTest_EMGLLF.R

diff --git a/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
index fe8f847..bf68ab3 100644 (file)
--- a/test/generate_test_data/generateRunSaveTest_EMGLLF.R
+++ b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
@@ -1,4 +1,5 @@
 source("EMGLLF.R")
+source("helper.R")
 
 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
        gamma=1., lambda=0.5, tau=1e-6)
@@ -36,7 +37,7 @@ generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
        write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
                row.names=F, col.names=F)
 
-       res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
+       res = EMGLLF_R(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
                gamma,lambda,xy$X,xy$Y,tau)
 
        #save outputs
@@ -45,4 +46,5 @@ generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
        write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
        write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F, col.names=F)
        write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
+       write.table(as.integer(res$affec), paste(testFolder,"affec",sep=""), row.names=F, col.names=F)
 }