Drop useless files (we will use R 'parallel' package)

[valse.git] / src / test / generate_test_data / generateRunSaveTest_constructionModelesLassoRank.R

diff --git a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R
deleted file mode 100644 (file)
index 559bd9e..0000000
--- a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R
+++ /dev/null
@@ -1,49 +0,0 @@
-source("helpers/constructionModelesLassoRank.R")
-
-generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, k=3, L=12, mini=5,
-       maxi=10, gamma=1.0, rangmin=3, rangmax=6)
-{
-  tau = 1e-6
-  pi = matrix(1./k, nrow=k, ncol=L)
-  rho = array(dim=c(m,m,k,L))
-  for (l in 1:L)
-       {
-    for (r in 1:k)
-      rho[,,r,l] = diag(1,m)
-  }
-  A1 = matrix(seq_len(p), nrow=p, ncol=L)
-       require(valse)
-  xy = valse:::generateXYdefault(n, p, m, k)
-
-  testFolder = "../data/"
-  dir.create(testFolder, showWarnings=FALSE, mode="0755")
-  #save inputs
-  write.table(as.double(pi), paste(testFolder,"pi",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(rho),paste(testFolder,"rho",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(tau),paste(testFolder,"tau",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(A1),paste(testFolder,"A1",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(rangmin),paste(testFolder,"rangmin",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(rangmax),paste(testFolder,"rangmax",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(c(n,p,m,k,L)),paste(testFolder,"dimensions",sep=""),
-               row.names=F, col.names=F)
-
-  res = constructionModelesLassoRank(pi,rho,mini,maxi,xy$X,xy$Y,tau,A1,rangmin,rangmax)
-
-  #save output
-  write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
-  write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
-}