Drop useless files (we will use R 'parallel' package)

[valse.git] / src / test / generate_test_data / generateRunSaveTest_constructionModelesLassoMLE.R

diff --git a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R
deleted file mode 100644 (file)
index dbce359..0000000
--- a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R
+++ /dev/null
@@ -1,65 +0,0 @@
-source("helpers/constructionModelesLassoMLE.R")
-
-generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5,
-       maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
-{
-       tau = 1e-6;
-       seuil = 1e-15;
-       L = length(glambda);
-  A1 = array(0, dim=c(p, m+1, L))
-  A2 = array(0, dim=c(p, m+1, L))
-  for (i in 1:L)
-       {
-    A1[,1,i] = seq_len(p)
-    A1[1:5,2,i] = seq_len(5)
-    A2[,1,i] = seq_len(p)
-    A2[1:5,2,i] = seq_len(5)
-  }
-       require(valse)
-  params = valse:::basicInitParameters(n, p, m, k)
-  xy = valse:::generateXYdefault(n, p, m, k)
-
-  testFolder = "../data/"
-  dir.create(testFolder, showWarnings=FALSE, mode="0755")
-  #save inputs
-  write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(glambda), paste(testFolder,"glambda",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(seuil), paste(testFolder,"seuil",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(tau), paste(testFolder,"tau",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(A1), paste(testFolder,"A1",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.double(A2), paste(testFolder,"A2",sep=""),
-               row.names=F, col.names=F)
-  write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""),
-               row.names=F, col.names=F)
-
-  res = constructionModelesLassoMLE(
-               params$phiInit,params$rhoInit,params$piInit,params$gamInit,
-               mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2)
-
-  #save output
-  write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
-  write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
-  write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
-  write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
-}