new tests + correction

[valse.git] / src / test / generate_test_data / generateRunSaveTest_EMGrank.R

diff --git a/src/test/generate_test_data/generateRunSaveTest_EMGrank.R b/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
new file mode 100644 (file)
index 0000000..6fc812a
--- /dev/null
+++ b/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
@@ -0,0 +1,34 @@
+generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4)){
+  testFolder = "data/"
+  dir.create(testFolder, showWarnings=FALSE, mode="0755")
+  delimiter = " "
+  
+  tau = 1e-6
+  
+  pi = rep(1.0/k, k)
+  rho = array(0, dim=c(m,m,k))
+  
+  for(i in 1:k){
+    rho[,,i] = diag(1,m)
+  }
+
+  #Generate X and Y
+  generateIOdef = generateIOdefault(n, p, m, k)
+  
+  #save inputs
+  write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter)
+  write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter)
+  write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
+  write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
+  write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter)
+  write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter)
+  write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
+  write.table(paste(testFolder,"rank",sep=""), rank, sep=delimiter)
+  write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
+  
+  EMG_rank = EMG(pi,rho,mini,maxi,X,Y,tau,rank)
+  
+  #save output
+  write.table(paste(testFolder,"phi",sep=""), EMG_rank$phi, sep=delimiter)
+  write.table(paste(testFolder,"LLF",sep=""), EMG_rank$LLF, sep=delimiter)
+}