Drop useless files (we will use R 'parallel' package)

[valse.git] / src / adapters / a.selectiontotale.c

diff --git a/src/adapters/a.selectiontotale.c b/src/adapters/a.selectiontotale.c
deleted file mode 100644 (file)
index 3bfab9f..0000000
--- a/src/adapters/a.selectiontotale.c
+++ /dev/null
@@ -1,90 +0,0 @@
-#include <R.h>
-#include <Rdefines.h>
-#include "selectiontotale.h"
-
-SEXP selectiontotale(
-       SEXP phiInit_,
-       SEXP rhoInit_,
-       SEXP piInit_,
-       SEXP gamInit_,
-       SEXP mini_,
-       SEXP maxi_,
-       SEXP gamma_,
-       SEXP glambda_,
-       SEXP X_,
-       SEXP Y_,
-       SEXP seuil_,
-       SEXP tau_
-) {
-       // Get matrices dimensions
-       SEXP dimX = getAttrib(X_, R_DimSymbol);
-       int n = INTEGER(dimX)[0];
-       int p = INTEGER(dimX)[1];
-       SEXP dimRhoInit = getAttrib(rhoInit_, R_DimSymbol);
-       int m = INTEGER(dimRhoInit)[0];
-       int k = INTEGER(dimRhoInit)[2];
-       int L = length(glambda_);
-
-       ////////////
-       // INPUTS //
-       ////////////
-
-       // get scalar parameters
-       int mini = INTEGER_VALUE(mini_);
-       int maxi = INTEGER_VALUE(maxi_);
-       double gamma = NUMERIC_VALUE(gamma_);
-       double seuil = NUMERIC_VALUE(seuil_);
-       double tau = NUMERIC_VALUE(tau_);
-
-       // Get pointers from SEXP arrays ; WARNING: by columns !
-       double* phiInit = REAL(phiInit_);
-       double* rhoInit = REAL(rhoInit_);
-       double* piInit = REAL(piInit_);
-       double* gamInit = REAL(gamInit_);
-       double* glambda = REAL(glambda_);
-       double* X = REAL(X_);
-       double* Y = REAL(Y_);
-
-       /////////////
-       // OUTPUTS //
-       /////////////
-
-       SEXP A1, A2, rho, pi, dimA, dimRho;
-       PROTECT(dimA = allocVector(INTSXP, 3));
-       int* pDimA = INTEGER(dimA);
-       pDimA[0] = p; pDimA[1] = m+1; pDimA[2] = L;
-       PROTECT(A1 = allocArray(INTSXP, dimA));
-       PROTECT(A2 = allocArray(INTSXP, dimA));
-       PROTECT(dimRho = allocVector(INTSXP, 4));
-       int* pDimRho = INTEGER(dimRho);
-       pDimRho[0] = m; pDimRho[1] = m; pDimRho[2] = k; pDimRho[3] = L;
-       PROTECT(rho = allocArray(REALSXP, dimRho));
-       PROTECT(pi = allocMatrix(REALSXP, k, L));
-       int *pA1=INTEGER(A1), *pA2=INTEGER(A2);
-       double *pRho=REAL(rho), *pPi=REAL(pi);
-
-       /////////////////////////////
-       // Call to selectiontotale //
-       /////////////////////////////
-
-       selectiontotale_core(
-               phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,glambda,X,Y,seuil,tau,
-               pA1,pA2,pRho,pPi,
-               n,p,m,k,L);
-
-       // Build list from OUT params and return it
-       SEXP listParams, listNames;
-       PROTECT(listParams = allocVector(VECSXP, 4));
-       char* lnames[4] = { "A1", "A2", "rho", "pi" }; //lists labels
-       PROTECT(listNames = allocVector(STRSXP, 4));
-       for (int i=0; i<4; i++)
-               SET_STRING_ELT(listNames,i,mkChar(lnames[i]));
-       setAttrib(listParams, R_NamesSymbol, listNames);
-       SET_VECTOR_ELT(listParams, 0, A1);
-       SET_VECTOR_ELT(listParams, 1, A2);
-       SET_VECTOR_ELT(listParams, 2, rho);
-       SET_VECTOR_ELT(listParams, 3, pi);
-
-       UNPROTECT(7);
-       return listParams;
-}