| 1 | generateRunSaveTest_constructionModelesLassoMLE = function(n, p, m, k, mini, maxi, gamma, glambda, varargin){ |
| 2 | #set defaults for optional inputs |
| 3 | optargs = c(200 15 10 3 5 10 1.0 list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) |
| 4 | #replace defaults by user parameters |
| 5 | optargs[1:length(varargin)] = varargin |
| 6 | n = optargs[1] |
| 7 | p = optargs[2] |
| 8 | m = optargs[3] |
| 9 | k = optargs[4] |
| 10 | mini = optargs[5] |
| 11 | maxi = optargs[6] |
| 12 | gamma = optargs[7] |
| 13 | glambda = optargs[8] |
| 14 | tau = 1e-6 |
| 15 | seuil = 1e-15 |
| 16 | L = length(glambda) |
| 17 | |
| 18 | #Generate phiInit,piInit,... |
| 19 | basicInit = basicInitParameters(n, p, m, k) |
| 20 | phiInit = basicInit$phiInit |
| 21 | rhoInit = basicInit$rhoInit |
| 22 | piInit = basicInit$piInit |
| 23 | gamInit = basicInit$gamInit |
| 24 | |
| 25 | #Generate X and Y |
| 26 | generateIOdef = generateIOdefault(n, p, m, k) |
| 27 | X = generateIOdef$X |
| 28 | Y = generateIOdef$Y |
| 29 | |
| 30 | A2 = array(0, dim=c(p, m+1, L)) |
| 31 | A1 = array(0, dim=c(p, m+1, L)) |
| 32 | for(i in 1:L){ |
| 33 | for(j in 1:p){ |
| 34 | A2[j, 1, i] = j |
| 35 | A1[j, 1, i] = j |
| 36 | } |
| 37 | for(k in 1:5){ |
| 38 | A2[k,2,i] = k |
| 39 | A1[k,2,i] = k |
| 40 | } |
| 41 | } |
| 42 | |
| 43 | testFolder = 'data/' |
| 44 | dir.create(testFolder) |
| 45 | delimiter = ' ' |
| 46 | |
| 47 | |
| 48 | #save inputs |
| 49 | write(strcat(testFolder,'phiInit'), reshape(phiInit,1), delimiter) |
| 50 | write(strcat(testFolder,'rhoInit'), reshape(rhoInit,1), delimiter) |
| 51 | write(strcat(testFolder,'piInit'), piInit, delimiter) |
| 52 | write(strcat(testFolder,'gamInit'), reshape(gamInit,1), delimiter) |
| 53 | write(strcat(testFolder,'mini'), mini, delimiter) |
| 54 | write(strcat(testFolder,'maxi'), maxi, delimiter) |
| 55 | write(strcat(testFolder,'gamma'), gamma, delimiter) |
| 56 | write(strcat(testFolder,'glambda'), glambda, delimiter) |
| 57 | write(strcat(testFolder,'X'), reshape(X,1), delimiter) |
| 58 | write(strcat(testFolder,'Y'), reshape(Y,1), delimiter) |
| 59 | mwrite(strcat(testFolder,'seuil'), seuil, delimiter) |
| 60 | write(strcat(testFolder,'tau'), tau, delimiter) |
| 61 | write(strcat(testFolder,'A1'), reshape(A1,1), delimiter) |
| 62 | write(strcat(testFolder,'A2'), reshape(A2,1), delimiter) |
| 63 | write(strcat(testFolder,'dimensions'), [n,p,m,k,L], delimiter) |
| 64 | |
| 65 | construct_LME = constructionModelesLassoMLE(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,glambda,X,Y,seuil,tau,A1,A2) |
| 66 | phi = construct_LME$phi |
| 67 | rho = construct_LME$rho |
| 68 | pi = construct_LME$pi |
| 69 | lvraisemblance = construct_LME$lvraisemblance |
| 70 | |
| 71 | #save output |
| 72 | write(strcat(testFolder,'phi'), reshape(phi,1), delimiter); |
| 73 | write(strcat(testFolder,'rho'), reshape(rho,1), delimiter); |
| 74 | write(strcat(testFolder,'pi'), reshape(pi,1), delimiter); |
| 75 | write(strcat(testFolder,'lvraisemblance'), reshape(lvraisemblance,1), delimiter); |
| 76 | } |