projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| df3ef2db BA |
1 | testEMGLLF = function() |
| 2 | { | |
| 3 | testFolder = "data/" | |
| 4 | array_delimiter = " " | |
| 5 | ||
| 6 | #get dimensions | |
| 7 | dimensions = read.table(paste(testFolder,"dimensions",sep=""), header=FALSE, | |
| 8 | sep=array_delimiter) | |
| 9 | n = dimensions[1] | |
| 10 | p = dimensions[2] | |
| 11 | m = dimensions[3] | |
| 12 | k = dimensions[4] | |
| 13 | ||
| 14 | #get all input arrays | |
| 15 | phiInit = read.table(paste(testFolder,"phiInit",sep=""), header=FALSE, sep=array_delimiter) | |
| 16 | rhoInit = read.table(paste(testFolder,"rhoInit",sep=""), header=FALSE, sep=array_delimiter) | |
| 17 | piInit = read.table(paste(testFolder,"piInit",sep=""), header=FALSE, sep=array_delimiter) | |
| 18 | gamInit = read.table(paste(testFolder,"gamInit",sep=""), header=FALSE, sep=array_delimiter) | |
| 19 | mini = read.table(paste(testFolder,"mini",sep=""), header=FALSE, sep=array_delimiter) | |
| 20 | maxi = read.table(paste(testFolder,"maxi",sep=""), header=FALSE, sep=array_delimiter) | |
| 21 | gamma = read.table(paste(testFolder,"gamma",sep=""), header=FALSE, sep=array_delimiter) | |
| 22 | lambda = read.table(paste(testFolder,"lambda",sep=""), header=FALSE, sep=array_delimiter) | |
| 23 | X = read.table(paste(testFolder,"X",sep=""), header=FALSE, sep=array_delimiter) | |
| 24 | Y = read.table(paste(testFolder,"Y",sep=""), header=FALSE, sep=array_delimiter) | |
| 25 | tau = read.table(paste(testFolder,"tau",sep=""), header=FALSE, sep=array_delimiter) | |
| 26 | ||
| 27 | #run EMGLLF.c | |
| 28 | EMG = .Call("EMGLLF_core",phiInit,rhoInit,piInit1,gamInit,mini,maxi,gamma,lambda,X,Y,tau, | |
| 29 | PACKAGE="valse") | |
| 30 | phi = EMG$phi | |
| 31 | rho = EMG$rho | |
| 32 | pi = EMG$pi | |
| 33 | LLF = EMG$LLF | |
| 34 | S = EMG$S | |
| 35 | ||
| 36 | #get all stored outputs | |
| 37 | ref_phi = read.table(paste(testFolder,"phi",sep=""), header=FALSE, sep=array_delimiter) | |
| 38 | ref_rho = read.table(paste(testFolder,"rho",sep=""), header=FALSE, sep=array_delimiter) | |
| 39 | ref_pi = read.table(paste(testFolder,"pi",sep=""), header=FALSE, sep=array_delimiter) | |
| 40 | ref_LLF = read.table(paste(testFolder,"LLF",sep=""), header=FALSE, sep=array_delimiter) | |
| 41 | ref_S = read.table(paste(testFolder,"S",sep=""), header=FALSE, sep=array_delimiter) | |
| 42 | ||
| 43 | #check that output correspond to stored output | |
| 44 | tol = 1e-5; | |
| 45 | checkOutput("phi",phi,ref_phi,tol); | |
| 46 | checkOutput("rho",rho,ref_rho,tol); | |
| 47 | checkOutput("pi",pi,ref_pi,tol); | |
| 48 | checkOutput("LLF",LLF,ref_LLF,tol); | |
| 49 | checkOutput("S",S,ref_S,tol); | |
| 50 | } |