projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| c3bc4705 BA |
1 | generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, |
| 2 | maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) | |
| 3 | { | |
| ef67d338 BA |
4 | tau = 1e-6; |
| 5 | seuil = 1e-15; | |
| 6 | L = length(glambda); | |
| dc425209 | 7 | A1 = array(0, dim=c(p, m+1, L)) |
| ef67d338 | 8 | A2 = array(0, dim=c(p, m+1, L)) |
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9 | for (i in 1:L) |
| 10 | { | |
| c3bc4705 | 11 | A1[,1,i] = seq_len(p) |
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12 | A1[1:5,2,i] = seq_len(5) |
| 13 | A2[,1,i] = seq_len(p) | |
| 14 | A2[1:5,2,i] = seq_len(5) | |
| dc425209 | 15 | } |
| ef67d338 BA |
16 | require(valse) |
| 17 | params = valse:::basicInitParameters(n, p, m, k) | |
| 18 | xy = valse:::generateXYdefault(n, p, m, k) | |
| c3bc4705 | 19 | |
| ef67d338 BA |
20 | testFolder = "data/" |
| 21 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
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22 | #save inputs |
| 23 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), | |
| 24 | row.names=F, col.names=F) | |
| 25 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
| 26 | row.names=F, col.names=F) | |
| 27 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
| 28 | row.names=F, col.names=F) | |
| 29 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
| 30 | row.names=F, col.names=F) | |
| 31 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
| 32 | row.names=F, col.names=F) | |
| 33 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
| 34 | row.names=F, col.names=F) | |
| 35 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
| 36 | row.names=F, col.names=F) | |
| 46a2e676 | 37 | write.table(as.double(glambda), paste(testFolder,"glambda",sep=""), |
| c3bc4705 | 38 | row.names=F, col.names=F) |
| ef67d338 | 39 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
| c3bc4705 | 40 | row.names=F, col.names=F) |
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41 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
| 42 | row.names=F, col.names=F) | |
| 43 | write.table(as.double(seuil), paste(testFolder,"seuil",sep=""), | |
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44 | row.names=F, col.names=F) |
| 45 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
| 46 | row.names=F, col.names=F) | |
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47 | write.table(as.double(A1), paste(testFolder,"A1",sep=""), |
| 48 | row.names=F, col.names=F) | |
| 49 | write.table(as.double(A2), paste(testFolder,"A2",sep=""), | |
| 50 | row.names=F, col.names=F) | |
| 51 | write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""), | |
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52 | row.names=F, col.names=F) |
| 53 | ||
| 54 | res = constructionModelesLassoMLE( | |
| 55 | params$phiInit,params$rhoInit,params$piInit,params$gamInit, | |
| ef67d338 | 56 | mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2) |
| c3bc4705 | 57 | |
| dc425209 | 58 | #save output |
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59 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) |
| 60 | write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) | |
| 61 | write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) | |
| 62 | write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F) | |
| dc425209 | 63 | } |