projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| 99b372ae BA |
1 | generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, |
| 2 | gamma=1., lambda=0.5, tau=1e-6) | |
| 3 | { | |
| 4 | testFolder = "data/" | |
| 5 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
| 99b372ae | 6 | |
| 9ade3f1b BA |
7 | require(valse) |
| 8 | params = valse:::basic_Init_Parameters(n, p, m, k) | |
| 99b372ae | 9 | io = generateIOdefault(n, p, m, k) |
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10 | |
| 11 | #save inputs | |
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12 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), |
| 13 | row.names=F, col.names=F) | |
| 14 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
| 15 | row.names=F, col.names=F) | |
| 16 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
| 17 | row.names=F, col.names=F) | |
| 18 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
| 19 | row.names=F, col.names=F) | |
| 20 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
| 21 | row.names=F, col.names=F) | |
| 22 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
| 23 | row.names=F, col.names=F) | |
| 24 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
| 25 | row.names=F, col.names=F) | |
| 26 | write.table(as.double(lambda), paste(testFolder,"lambda",sep=""), | |
| 27 | row.names=F, col.names=F) | |
| 28 | write.table(as.double(io$X), paste(testFolder,"X",sep=""), | |
| 29 | row.names=F, col.names=F) | |
| 30 | write.table(as.double(io$Y), paste(testFolder,"Y",sep=""), | |
| 31 | row.names=F, col.names=F) | |
| 32 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
| 33 | row.names=F, col.names=F) | |
| 34 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), | |
| 35 | row.names=F, col.names=F) | |
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36 | |
| 37 | res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi, | |
| e8bb4764 | 38 | gamma,lambda,io$X,io$Y,tau) |
| 99b372ae BA |
39 | |
| 40 | #save outputs | |
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41 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) |
| 42 | write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) | |
| 43 | write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) | |
| 44 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F, col.names=F) | |
| 45 | write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F) | |
| 99b372ae | 46 | } |