attempt to fix F_Neighbors2
[talweg.git] / pkg / R / getData.R
CommitLineData
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1#' @title Acquire data in a clean format
2#'
3#' @description Take in input data frames and/or files containing raw data, and timezones, and
4#' output a Data object, roughly corresponding to a list where each cell contains all value
25b75559 5#' for one day (see \code{?Data}).
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6#'
7#' @param ts_data Time-series, as a data frame (DB style: 2 columns, first is date/time,
8#' second is value) or a CSV file
9#' @param exo_data Exogenous variables, as a data frame or a CSV file; first comlumn is dates,
10#' next block are measurements for the day, and final block are exogenous forecasts
11#' @param input_tz Timezone in the input files ("GMT" or e.g. "Europe/Paris")
12#' @param date_format How date/time are stored (e.g. year/month/day hour:minutes;
13#' see \code{strptime})
14#' @param working_tz Timezone to work with ("GMT" or e.g. "Europe/Paris")
09cf9c19 15#' @param predict_at When does the prediction take place ? Integer, in hours. Default: 0
f17665c7 16#' @param limit Number of days to extract (default: Inf, for "all")
3d69ff21 17#'
a66a84b5 18#' @return An object of class Data
3d69ff21 19#'
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20#' @examples
21#' ts_data = read.csv(system.file("extdata","pm10_mesures_H_loc.csv",package="talweg"))
22#' exo_data = read.csv(system.file("extdata","meteo_extra_noNAs.csv",package="talweg"))
25b75559 23#' data = getData(ts_data, exo_data, limit=120)
3d69ff21 24#' @export
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25getData = function(ts_data, exo_data, input_tz="GMT", date_format="%d/%m/%Y %H:%M",
26 working_tz="GMT", predict_at=0, limit=Inf)
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27{
28 # Sanity checks (not full, but sufficient at this stage)
29 if (!is.character(input_tz) || !is.character(working_tz))
30 stop("Bad timezone (see ?timezone)")
31 input_tz = input_tz[1]
32 working_tz = working_tz[1]
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33 if ( (!is.data.frame(ts_data) && !is.character(ts_data)) ||
34 (!is.data.frame(exo_data) && !is.character(exo_data)) )
613a986f 35 stop("Bad time-series / exogenous input (data frame or CSV file)")
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36 if (is.character(ts_data))
37 ts_data = ts_data[1]
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38 if (is.character(exo_data))
39 exo_data = exo_data[1]
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40 predict_at = as.integer(predict_at)[1]
41 if (predict_at<0 || predict_at>23)
42 stop("Bad predict_at (0-23)")
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43 if (!is.character(date_format))
44 stop("Bad date_format (character)")
45 date_format = date_format[1]
46
47 ts_df =
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48 if (is.character(ts_data))
49 read.csv(ts_data)
50 else
3d69ff21 51 ts_data
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52 # Convert to the desired timezone (usually "GMT" or "Europe/Paris")
53 formatted_dates_POSIXlt = strptime(as.character(ts_df[,1]), date_format, tz=input_tz)
54 ts_df[,1] = format(as.POSIXct(formatted_dates_POSIXlt, tz=input_tz), tz=working_tz, usetz=TRUE)
55
3d69ff21 56 exo_df =
613a986f 57 if (is.character(exo_data))
3d69ff21 58 read.csv(exo_data)
613a986f 59 else
3d69ff21 60 exo_data
7f90df63 61 # Times in exogenous variables file are ignored: no conversions required
3d69ff21 62
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63 line = 1 #index in PM10 file (24 lines for 1 cell)
64 nb_lines = nrow(ts_df)
65 nb_exos = ( ncol(exo_df) - 1 ) / 2
a66a84b5 66 data = Data$new()
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67 i = 1 #index of a cell in data
68 while (line <= nb_lines)
69 {
70 time = c()
71 serie = c()
09cf9c19 72 repeat
3d69ff21 73 {
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74 {
75 time = c(time, ts_df[line,1])
76 serie = c(serie, ts_df[line,2])
77 line = line + 1
78 };
6deb7005 79 if (line >= nb_lines + 1 || as.POSIXlt(ts_df[line-1,1],tz=working_tz)$hour == predict_at)
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80 break
81 }
3d69ff21 82
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83 exo = as.data.frame( exo_df[i,2:(1+nb_exos)] )
84 exo_hat = as.data.frame( exo_df[i,(1+nb_exos+1):(1+2*nb_exos)] )
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85 level = mean(serie, na.rm=TRUE)
86 centered_serie = serie - level
a66a84b5 87 data$append(time, centered_serie, level, exo, exo_hat)
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88 if (i >= limit)
89 break
90 i = i + 1
3d69ff21 91 }
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92 if (length(data$getCenteredSerie(1)) < length(data$getCenteredSerie(2)))
93 data$removeFirst()
94 if (length(data$getCenteredSerie(data$getSize()))
95 < length(data$getCenteredSerie(data$getSize()-1)))
f17665c7 96 {
a66a84b5 97 data$removeLast()
f17665c7 98 }
f17665c7 99 data
3d69ff21 100}