Preparing for CRAN upload

[agghoo.git] / agghoo.Rcheck / 00_pkg_src / agghoo / R / checks.R

diff --git a/agghoo.Rcheck/00_pkg_src/agghoo/R/checks.R b/agghoo.Rcheck/00_pkg_src/agghoo/R/checks.R
deleted file mode 100644 (file)
index a19d55f..0000000
--- a/agghoo.Rcheck/00_pkg_src/agghoo/R/checks.R
+++ /dev/null
@@ -1,102 +0,0 @@
-# Internal usage: check and fill arguments with default values.
-
-defaultLoss_classif <- function(y1, y2) {
-  if (is.null(dim(y1)))
-    # Standard case: "hard" classification
-    mean(y1 != y2)
-  else {
-    # "Soft" classification: predict() outputs a probability matrix
-    # In this case "target" could be in matrix form.
-    if (!is.null(dim(y2)))
-      mean(rowSums(abs(y1 - y2)))
-    else {
-      # Or not: y2 is a "factor".
-      y2 <- as.character(y2)
-      # NOTE: the user should provide target in matrix form because
-      # matching y2 with columns is rather inefficient!
-      names <- colnames(y1)
-      positions <- list()
-      for (idx in seq_along(names))
-        positions[[ names[idx] ]] <- idx
-      mean(vapply(
-        seq_along(y2),
-        function(idx) sum(abs(y1[idx,] - positions[[ y2[idx] ]])),
-        0))
-    }
-  }
-}
-
-defaultLoss_regress <- function(y1, y2) {
-  mean(abs(y1 - y2))
-}
-
-# TODO: allow strings like "MSE", "abs" etc
-checkLoss <- function(loss, task) {
-  if (!is.null(loss) && !is.function(loss))
-    stop("loss: function(y1, y2) --> Real")
-  if (is.null(loss)) {
-    loss <- if (task == "classification") {
-      defaultLoss_classif
-    } else {
-      defaultLoss_regress
-    }
-  }
-  loss
-}
-
-checkCV <- function(CV) {
-  if (is.null(CV))
-    CV <- list(type="MC", V=10, test_size=0.2, shuffle=TRUE)
-  else {
-    if (!is.list(CV))
-      stop("CV: list of type('MC'|'vfold'), V(integer, [test_size, shuffle]")
-    if (is.null(CV$type)) {
-      warning("CV$type not provided: set to MC")
-      CV$type <- "MC"
-    }
-    if (is.null(CV$V)) {
-      warning("CV$V not provided: set to 10")
-      CV$V <- 10
-    }
-    if (CV$type == "MC" && is.null(CV$test_size))
-      CV$test_size <- 0.2
-    if (CV$type == "vfold" && is.null(CV$shuffle))
-      CV$shuffle <- TRUE
-  }
-  CV
-}
-
-checkDaTa <- function(data, target) {
-  if (!is.data.frame(data) && !is.matrix(data))
-    stop("data: data.frame or matrix")
-  if (is.data.frame(target) || is.matrix(target)) {
-    if (!is.numeric(target))
-      stop("multi-columns target must be a probability matrix")
-    if (nrow(target) != nrow(data) || ncol(target) == 1)
-      stop("target probability matrix does not match data size")
-  }
-  else if (!is.numeric(target) && !is.factor(target) && !is.character(target))
-    stop("target: numeric, factor or character vector")
-}
-
-checkTask <- function(task, target) {
-  if (!is.null(task))
-    task <- match.arg(task, c("classification", "regression"))
-  ifelse(is.numeric(target), "regression", "classification")
-}
-
-checkModPar <- function(gmodel, params) {
-  if (is.character(gmodel))
-    gmodel <- match.arg(gmodel, c("knn", "ppr", "rf", "tree"))
-  else if (!is.null(gmodel) && !is.function(gmodel))
-    stop("gmodel: function(dataHO, targetHO, param) --> function(X) --> y")
-  if (is.numeric(params) || is.character(params))
-    params <- as.list(params)
-  if (!is.list(params) && !is.null(params))
-    stop("params: numerical, character, or list (passed to model)")
-  if (is.function(gmodel) && !is.list(params))
-    stop("params must be provided when using a custom model")
-  if (is.list(params) && is.null(gmodel))
-    stop("model (or family) must be provided when using custom params")
-  list(gmodel=gmodel, params=params)
-}