new tests + correction

[valse.git] / src / test / generate_test_data / generateRunSaveTest_selectiontotale.R

diff --git a/src/test/generate_test_data/generateRunSaveTest_selectiontotale.R b/src/test/generate_test_data/generateRunSaveTest_selectiontotale.R
new file mode 100644 (file)
index 0000000..b366ec9
--- /dev/null
+++ b/src/test/generate_test_data/generateRunSaveTest_selectiontotale.R
@@ -0,0 +1,34 @@
+generateRunSaveTest_selectiontotale= function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){
+  testFolder = "data/"
+  dir.create(testFolder, showWarnings=FALSE, mode="0755")
+  delimiter = " "
+  
+  #Generate phiInit,piInit,...
+  params = basicInitParameters(n, p, m, k)
+  
+  #Generate X and Y
+  generateIOdef = generateIOdefault(n, p, m, k)
+  
+  #save inputs
+  write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter)
+  write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter)
+  write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter)
+  write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter)
+  write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
+  write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
+  write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter)
+  write.table(paste(testFolder,"lambda",sep=""), glambda, sep=delimiter)
+  write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter)
+  write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter)
+  write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
+  write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
+  
+  
+  selec = selectiontotale(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil, tau)
+  
+  #save output
+  write.table(paste(testFolder,"A1",sep=""), selec$A1, sep=delimiter)
+  write.table(paste(testFolder,"A2",sep=""), selec$A2, sep=delimiter)
+  write.table(paste(testFolder,"rho",sep=""), selec$rho, sep=delimiter)
+  write.table(paste(testFolder,"pi",sep=""), selec$pi, sep=delimiter)
+}