reorganize folder
[aggexp.git] / R / b_LinearAlgorithm.R
diff --git a/R/b_LinearAlgorithm.R b/R/b_LinearAlgorithm.R
deleted file mode 100644 (file)
index aaba031..0000000
+++ /dev/null
@@ -1,160 +0,0 @@
-#' @include b_Algorithm.R
-
-#' @title Linear Algorithm
-#'
-#' @description Generic class to represent a linear algorithm. 
-#' TODO: not needed in production environment; weights growing infinitely. 
-#' Inherits \code{\link{Algorithm}}
-#'
-#' @field weights The matrix of weights (in rows) associated to each expert (in columns)
-#'
-LinearAlgorithm = setRefClass(
-       Class = "LinearAlgorithm",
-
-       fields = c(
-               weights = "matrix"
-       ),
-
-       contains = "Algorithm",
-
-       methods = list(
-               initialize = function(...)
-               {
-                       callSuper(...)
-                       weights <<- matrix(nrow=0, ncol=ncol(data)-3)
-               },
-
-               appendWeight = function(weight)
-               {
-                       "Append the last computed weights to the weights matrix, for further plotting"
-
-                       n = nrow(data)
-                       nx = n - nrow(subset(data, subset = (Date == data[n,"Date"])))
-                       x = data[(nx+1):n, !names(data) %in% c("Date","Measure","Station")]
-                       iy = getNoNAindices(x, 2)
-
-                       completedWeight = rep(NA, ncol(x))
-                       completedWeight[iy] = weight
-                       weights <<- rbind(weights, completedWeight)
-               },
-
-               plotWeights = function(station=1, start=1, ...)
-               {
-                       "Plot the weights of each expert over time"
-
-                       if (is.character(station))
-                               station = match(station, stations)
-
-                       #keep only full weights (1 to K)
-                       weights_ = weights[getNoNAindices(weights),]
-                       weights_ = weights_[start:nrow(weights_),]
-
-                       yRange = range(weights_, na.rm=TRUE)
-                       K = ncol(weights_)
-                       cols = rainbow(K)
-                       par(mar=c(5,4.5,1,1), cex=1.5)
-                       for (i in 1:K)
-                       {
-                               plot(weights_[,i], type="l", xaxt="n", ylim=yRange, col=cols[i], xlab="", ylab="",cex.axis=1.5, ...)
-                               par(new=TRUE)
-                       }
-                       axis(side=1, at=seq(from=1,to=nrow(weights_),by=30), labels=seq(from=0,to=nrow(weights_),by=30) + start, cex.axis=1.5)
-                       title(xlab="Time",ylab="Weight", cex.lab=1.6)
-               },
-
-               plotWeights_rn = function(station=1, start=1, ...)
-               {
-                       "Weights plotting tailored for AirNormand reports"
-
-                       if (is.character(station))
-                               station = match(station, stations)
-
-                       cols = c(
-                               colors()[258], #CLM (vert)
-                               colors()[258], #GAM
-                               colors()[258], #CLM1
-                               colors()[258], #CLM2
-                               colors()[53], #S_AIRPARIF (orange)
-                               colors()[53], #S_INERIS
-                               colors()[28], #D_ESMERALDA (bleu)
-                               colors()[28], #D_PREVAIR
-                               colors()[28], #D_PREVAIR2
-                               1 #PERSIST (noir)
-                       )
-                       #l : ligne, b : cercles, o : cercles+ligne
-                       plotTypes = rep("b", length(cols))
-                       ltypes = c(1,3,1,3,1,3,1,3,1,1)
-                       pchtypes = c(21,22,24,25,21,22,21,22,24,21)
-
-                       #keep only full weights (1 to K)
-                       weights_ = weights[getNoNAindices(weights),]
-                       weights_ = weights_[start:nrow(weights_),]
-
-                       #TODO: HACK for plotting for presentation...
-                       #should be: yRange = range(weights_, na.rm = TRUE)
-                       yRange = quantile(weights_, probs=c(0.02, 0.98))
-
-                       par(mar=c(5,4.5,1,1), cex=1.5)
-                       for (j in 1:ncol(weights_))
-                       {
-                               plot(weights_[,j],xaxt="n",ylim=yRange,type=plotTypes[j],col=cols[j],bg=cols[j],lty=ltypes[j],pch=pchtypes[j],xlab="",ylab="",cex.axis=1.5, ...)
-                               par(new=TRUE)
-                       }
-                       axis(side=1, at=seq(from=1,to=nrow(weights_),by=30), labels=seq(from=0,to=nrow(weights_),by=30) + start, cex.axis=1.5)
-                       title(xlab="Time",ylab="Weight", cex.lab=1.6)
-               },
-
-               plotWeightsByFamily_rn = function(station=1, type="Absolute", start=1, legend=TRUE, ...)
-               {
-                       "Weights plotting for AirNormand reports, by family of experts. type == 'Relative' or 'Absolute'"
-
-                       if (is.character(station))
-                               station = match(station, stations)
-
-                       #keep only full weights (1 to K)
-                       weights_ = weights[getNoNAindices(weights),]
-                       weights_ = weights_[start:nrow(weights_),]
-
-                       summary = matrix(nrow=nrow(weights_), ncol=4)
-                       if (type == "Relative") 
-                       {
-                               summary[,1] = weights_[,1] + weights_[,2] + weights_[,3] + weights_[,4]
-                               summary[,2] = weights_[,5] + weights_[,6]
-                               summary[,3] = weights_[,7] + weights_[,8] + weights_[,9]
-                               summary[,4] = weights_[,10]
-                       }
-                       else 
-                       {
-                               summary[,1] = abs(weights_[,1]) + abs(weights_[,2]) + abs(weights_[,3]) + abs(weights_[,4])
-                               summary[,2] = abs(weights_[,5]) + abs(weights_[,6])
-                               summary[,3] = abs(weights_[,7]) + abs(weights_[,8]) + abs(weights_[,9])
-                               summary[,4] = abs(weights_[,10])
-                       }
-
-                       cols = c(
-                               colors()[258], #GAM,CLM,1,2 (vert)
-                               colors()[53], #S_AIRPARIF,S_INERIS (orange)
-                               colors()[28], #D_ESMERALDA,D_PREVAIR,D_PREVAIR2 (bleu)
-                               1 #PERSIST
-                       )
-                       #l : ligne, b : cercles, o : cercles+ligne
-                       plotTypes = c("l", "l", "l", "l")
-                       
-                       yRange = range(summary)
-                       par(mar=c(5,4.5,3,1), cex=1.5)
-                       for (j in 1:4)
-                       {
-                               plot(summary[,j],xaxt="n",ylim=yRange,type=plotTypes[j],col=cols[j], xlab="", ylab="", cex.axis=1.5, lwd=2, ...)
-                               par(new=TRUE)
-                       }
-                       axis(side=1, at=seq(from=1,to=nrow(weights_),by=30), labels=seq(from=0,to=nrow(weights_),by=30) + start, cex.axis=1.5)
-                       title(xlab="Time",ylab=paste(type, "sum of weights"), cex.lab=1.6, main=paste(type, "sum of weights by family"))
-                       if (legend)
-                       {
-                               legend("topright",  #title="Somme des poids par famille",
-                                       col=c(colors()[258], colors()[53], colors()[28], 1), lwd=2, cex=1.1, 
-                                       lty=rep("solid",4),legend=c("Stat. Air Normand","Stat. others","Deterministic", "Persistence"))
-                       }
-               }
-       )
-)