prepare structure for R package

[valse.git] / InputParameters / selectiontotale_interface.c

diff --git a/InputParameters/selectiontotale_interface.c b/InputParameters/selectiontotale_interface.c
deleted file mode 100644 (file)
index b4b8f4c..0000000
--- a/InputParameters/selectiontotale_interface.c
+++ /dev/null
@@ -1,127 +0,0 @@
-#include "ioutils.h"
-#include "selectiontotale.h"
-#include "EMGLLF.h"
-#include <mex.h>
-
-// nlhs, nrhs: resp. numbers of out and in parameters.
-// plhs: array of out parameters, each being a mxArray
-// plhs: array of in parameters (immutable), each being a mxArray
-//
-// MATLAB translates a call [A,B] = fun(C,D) into mexFunction(2,{A,B},2,{C,D}). 
-// Then mxArrayS are adapted to be passed to a regular C function, 
-// and the results are translated back to mxArrayS into plhs.
-void mexFunction(int nlhs, mxArray* plhs[], 
-                 int nrhs, const mxArray* prhs[])
-{
-       // Basic sanity checks
-       if (nrhs!=12) 
-               mexErrMsgIdAndTxt("select:selectiontotale:nrhs","12 inputs required.");
-       if (nlhs!=4) 
-               mexErrMsgIdAndTxt("select:selectiontotale:nlhs","4 outputs required.");
-
-       // Get matrices dimensions, to be given to main routine above
-       const mwSize n = mxGetDimensions(prhs[8])[0];
-       const mwSize p = mxGetDimensions(prhs[8])[1];
-       const mwSize m = mxGetDimensions(prhs[1])[0];
-       const mwSize k = mxGetDimensions(prhs[1])[2];
-       const mwSize L = mxGetNumberOfElements(prhs[7]);
-
-       ////////////
-       // INPUTS //
-       ////////////
-
-       // phiInit
-       const mwSize* dimPhiInit = mxGetDimensions(prhs[0]);
-       Real* brPhiInit = matlabToBrArray_real(mxGetPr(prhs[0]), dimPhiInit, 3);
-       
-       // rhoInit
-       const mwSize* dimRhoInit = mxGetDimensions(prhs[1]);
-       Real* brRhoInit = matlabToBrArray_real(mxGetPr(prhs[1]), dimRhoInit, 3);
-
-       // piInit
-       Real* piInit = mxGetPr(prhs[2]);
-
-       // gamInit
-       const mwSize* dimGamInit = mxGetDimensions(prhs[3]);
-       Real* brGamInit = matlabToBrArray_real(mxGetPr(prhs[3]), dimGamInit, 2);
-
-       // min number of iterations
-       Int mini = ((Int*)mxGetData(prhs[4]))[0];
-
-       // max number of iterations
-       Int maxi = ((Int*)mxGetData(prhs[5]))[0];
-
-       // gamma
-       Real gamma = mxGetScalar(prhs[6]);
-
-       // glambda
-       Real* glambda = mxGetPr(prhs[7]);
-
-       // X
-       const mwSize* dimX = mxGetDimensions(prhs[8]);
-       Real* brX = matlabToBrArray_real(mxGetPr(prhs[8]), dimX, 2);
-       
-       // Y
-       const mwSize* dimY = mxGetDimensions(prhs[9]);
-       Real* brY = matlabToBrArray_real(mxGetPr(prhs[9]), dimY, 2);
-       
-       //seuil
-       Real seuil = mxGetScalar(prhs[10]);
-
-       // tau
-       Real tau = mxGetScalar(prhs[11]);
-
-       /////////////
-       // OUTPUTS //
-       /////////////
-       
-       // A1
-       mwSize dimA[] = {p,m+1,L};
-       plhs[0] = mxCreateNumericArray(3,dimA,mxGetClassID(prhs[4]),mxREAL);
-       Int* A1 = (Int*)mxGetData(plhs[0]);
-       
-       // A2
-       plhs[1] = mxCreateNumericArray(3,dimA,mxGetClassID(prhs[4]),mxREAL);
-       Int* A2 = (Int*)mxGetData(plhs[1]);
-       
-       // rho
-       const mwSize dimRho[] = {dimRhoInit[0], dimRhoInit[1], dimRhoInit[2], L};
-       plhs[2] = mxCreateNumericArray(4,dimRho,mxDOUBLE_CLASS,mxREAL);
-       Real* Rho = mxGetPr(plhs[2]);
-
-       // pi
-       const mwSize dimPi[] = {k, L};
-       plhs[3] = mxCreateNumericMatrix(dimPi[0],dimPi[1],mxDOUBLE_CLASS,mxREAL);
-       double* Pi = mxGetPr(plhs[3]);
-
-       /////////////////////////////
-       // Call to selectiontotale //
-       /////////////////////////////
-
-       selectiontotale(brPhiInit,brRhoInit,piInit,brGamInit,mini,maxi,gamma,glambda,brX,brY,seuil,tau,
-               A1,A2,Rho,Pi,
-               n,p,m,k,L);
-       
-       free(brPhiInit);
-       free(brRhoInit);
-       free(brGamInit);
-       free(brX);
-       free(brY);
-       
-       //post-processing: convert by-rows outputs to MATLAB matrices
-       Int* mlA1 = brToMatlabArray_int(A1,dimA,3);
-       copyArray(mlA1,A1,dimA[0]*dimA[1]*dimA[2]);
-       free(mlA1);
-       
-       Int* mlA2 = brToMatlabArray_int(A2,dimA,3);
-       copyArray(mlA2,A2,dimA[0]*dimA[1]*dimA[2]);
-       free(mlA2);
-       
-       Real* mlRho = brToMatlabArray_real(Rho, dimRho, 4);
-       copyArray(mlRho, Rho, dimRho[0]*dimRho[1]*dimRho[2]*dimRho[3]);
-       free(mlRho);
-
-       Real* mlPi = brToMatlabArray_real(Pi, dimPi, 2);
-       copyArray(mlPi, Pi, dimPi[0]*dimPi[1]);
-       free(mlPi);
-}