From: Benjamin Auder <benjamin.auder@somewhere>
Date: Sat, 14 Jan 2017 12:16:23 +0000 (+0100)
Subject: no more need for src/test/testX.R
X-Git-Url: https://git.auder.net/variants/current/doc/css/img/assets/%3C?a=commitdiff_plain;h=76fb4dac1ebe070371f1c081b83fce1cb8677564;p=valse.git

no more need for src/test/testX.R
---

diff --git a/src/test/testEMGLLF.R b/src/test/testEMGLLF.R
deleted file mode 100644
index 9ba7058..0000000
--- a/src/test/testEMGLLF.R
+++ /dev/null
@@ -1,50 +0,0 @@
-testEMGLLF = function()
-{
-	testFolder = "data/"
-	array_delimiter = " "
-
-	#get dimensions
-	dimensions = read.table(paste(testFolder,"dimensions",sep=""), header=FALSE,
-		sep=array_delimiter)
-	n = dimensions[1]
-	p = dimensions[2]
-	m = dimensions[3]
-	k = dimensions[4]
-
-	#get all input arrays
-	phiInit = read.table(paste(testFolder,"phiInit",sep=""), header=FALSE, sep=array_delimiter)
-	rhoInit = read.table(paste(testFolder,"rhoInit",sep=""), header=FALSE, sep=array_delimiter)
-	piInit = read.table(paste(testFolder,"piInit",sep=""), header=FALSE, sep=array_delimiter)
-	gamInit = read.table(paste(testFolder,"gamInit",sep=""), header=FALSE, sep=array_delimiter)
-	mini = read.table(paste(testFolder,"mini",sep=""), header=FALSE, sep=array_delimiter)
-	maxi = read.table(paste(testFolder,"maxi",sep=""), header=FALSE, sep=array_delimiter)
-	gamma = read.table(paste(testFolder,"gamma",sep=""), header=FALSE, sep=array_delimiter)
-	lambda = read.table(paste(testFolder,"lambda",sep=""), header=FALSE, sep=array_delimiter)
-	X = read.table(paste(testFolder,"X",sep=""), header=FALSE, sep=array_delimiter)
-	Y = read.table(paste(testFolder,"Y",sep=""), header=FALSE, sep=array_delimiter)
-	tau = read.table(paste(testFolder,"tau",sep=""), header=FALSE, sep=array_delimiter)
-
-	#run EMGLLF.c
-	EMG = .Call("EMGLLF_core",phiInit,rhoInit,piInit1,gamInit,mini,maxi,gamma,lambda,X,Y,tau,
-		PACKAGE="valse")
-	phi = EMG$phi
-	rho = EMG$rho
-	pi = EMG$pi
-	LLF = EMG$LLF
-	S = EMG$S
-
-	#get all stored outputs
-	ref_phi = read.table(paste(testFolder,"phi",sep=""), header=FALSE, sep=array_delimiter)
-	ref_rho = read.table(paste(testFolder,"rho",sep=""), header=FALSE, sep=array_delimiter)
-	ref_pi = read.table(paste(testFolder,"pi",sep=""), header=FALSE, sep=array_delimiter)
-	ref_LLF = read.table(paste(testFolder,"LLF",sep=""), header=FALSE, sep=array_delimiter)
-	ref_S = read.table(paste(testFolder,"S",sep=""), header=FALSE, sep=array_delimiter)
-
-	#check that output correspond to stored output
-	tol = 1e-5;
-	checkOutput("phi",phi,ref_phi,tol);
-	checkOutput("rho",rho,ref_rho,tol);
-	checkOutput("pi",pi,ref_pi,tol);
-	checkOutput("LLF",LLF,ref_LLF,tol);
-	checkOutput("S",S,ref_S,tol);
-}