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c3bc4705 BA |
1 | generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, |
2 | maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) | |
3 | { | |
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4 | testFolder = "data/" |
5 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
c3bc4705 | 6 | |
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7 | require(valse) |
8 | params = valse:::basic_Init_Parameters(n, p, m, k) | |
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9 | A2 = array(0, dim=c(p, m+1, L)) |
10 | A1 = array(0, dim=c(p, m+1, L)) | |
c3bc4705 BA |
11 | for (i in 1:L) |
12 | { | |
13 | A2[,1,i] = seq_len(p) | |
14 | A2[,2,i] = seq_len(5) | |
15 | A1[,1,i] = seq_len(p) | |
16 | A1[,2,i] = seq_len(5) | |
dc425209 | 17 | } |
c3bc4705 BA |
18 | io = generateIOdefault(n, p, m, k) |
19 | ||
20 | #save inputs | |
21 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), | |
22 | row.names=F, col.names=F) | |
23 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
24 | row.names=F, col.names=F) | |
25 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
26 | row.names=F, col.names=F) | |
27 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
28 | row.names=F, col.names=F) | |
29 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
30 | row.names=F, col.names=F) | |
31 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
32 | row.names=F, col.names=F) | |
33 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
34 | row.names=F, col.names=F) | |
35 | write.table(as.double(lambda), paste(testFolder,"lambda",sep=""), | |
36 | row.names=F, col.names=F) | |
37 | write.table(as.double(io$X), paste(testFolder,"X",sep=""), | |
38 | row.names=F, col.names=F) | |
39 | write.table(as.double(io$Y), paste(testFolder,"Y",sep=""), | |
40 | row.names=F, col.names=F) | |
41 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
42 | row.names=F, col.names=F) | |
43 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), | |
44 | row.names=F, col.names=F) | |
45 | ||
46 | res = constructionModelesLassoMLE( | |
47 | params$phiInit,params$rhoInit,params$piInit,params$gamInit, | |
48 | mini,maxi,gamma,glambda,io$X,io$Y,seuil,tau,A1,A2) | |
49 | ||
dc425209 | 50 | #save output |
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51 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) |
52 | write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) | |
53 | write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) | |
54 | write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F) | |
dc425209 | 55 | } |