[ppam-mpi.git] / code / ppam.sh

#!/bin/bash
#PBS -l walltime=00:05:00
#PBS -l nodes=4:ppn=4,pmem=1gb
#PBS -o output.txt
#PBS -e error.txt

WORKDIR="/workdir/auder/ppam_mpi/src"
cd $WORKDIR

rm -f output.txt
rm -f error.txt

saveLibPath=$LD_LIBRARY_PATH
LD_LIBRARY_PATH=/workdir/cds/lib:/opt/openmpi/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH

# ppam args (in case of clustering) = 
#   1: path to binary dataset
#   2: series per processor
#   3: number of clusters
#   4: boolean to randomize series sampling
#   5: type of distance (1 for L1, 2 for L2...)
mpirun -np 16 ppam cluster ../data/2009_first10000.bin 300 7 0 1

LD_LIBRARY_PATH=$saveLibPath
export LD_LIBRARY_PATH
Commit	Line	Data
	1	#!/bin/bash
	2	#PBS -l walltime=00:05:00
	3	#PBS -l nodes=4:ppn=4,pmem=1gb
	4	#PBS -o output.txt
	5	#PBS -e error.txt
	6
	7	WORKDIR="/workdir/auder/ppam_mpi/src"
	8	cd $WORKDIR
	9
	10	rm -f output.txt
	11	rm -f error.txt
	12
	13	saveLibPath=$LD_LIBRARY_PATH
	14	LD_LIBRARY_PATH=/workdir/cds/lib:/opt/openmpi/lib:$LD_LIBRARY_PATH
	15	export LD_LIBRARY_PATH
	16
	17	# ppam args (in case of clustering) =
	18	# 1: path to binary dataset
	19	# 2: series per processor
	20	# 3: number of clusters
	21	# 4: boolean to randomize series sampling
	22	# 5: type of distance (1 for L1, 2 for L2...)
	23	mpirun -np 16 ppam cluster ../data/2009_first10000.bin 300 7 0 1
	24
	25	LD_LIBRARY_PATH=$saveLibPath
	26	export LD_LIBRARY_PATH