projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| 3453829e BA |
1 | source("helper.R") |
| 2 | library(valse) | |
| 3 | ||
| 4 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4)) | |
| 5 | { | |
| 6 | eps = 1e-6 | |
| 7 | Pi = rep(1.0/k, k) | |
| 8 | Rho = array(dim=c(m,m,k)) | |
| 9 | for(i in 1:k) | |
| 10 | Rho[,,i] = diag(1,m) | |
| 11 | xy = generateXYdefault(n, p, m, k) | |
| 12 | ||
| 13 | testFolder = "./data/" | |
| 14 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
| 15 | #save inputs | |
| 16 | write.table(as.double(Pi), paste(testFolder,"Pi",sep=""), | |
| 17 | row.names=F, col.names=F) | |
| 18 | write.table(as.double(Rho), paste(testFolder,"Rho",sep=""), | |
| 19 | row.names=F, col.names=F) | |
| 20 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
| 21 | row.names=F, col.names=F) | |
| 22 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
| 23 | row.names=F, col.names=F) | |
| 24 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), | |
| 25 | row.names=F, col.names=F) | |
| 26 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), | |
| 27 | row.names=F, col.names=F) | |
| 28 | write.table(as.double(eps), paste(testFolder,"eps",sep=""), | |
| 29 | row.names=F, col.names=F) | |
| 30 | write.table(as.integer(rank), paste(testFolder,"rank",sep=""), | |
| 31 | row.names=F, col.names=F) | |
| 32 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), | |
| 33 | row.names=F, col.names=F) | |
| 34 | ||
| 35 | res = valse::EMGrank(Pi,Rho,mini,maxi,xy$X,xy$Y,eps,rank,fast=FALSE) | |
| 36 | ||
| 37 | #save output | |
| 38 | write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F) | |
| 39 | write.table(as.double(res$LLF),paste(testFolder,"LLF",sep=""),row.names=F,col.names=F) | |
| 40 | } |