test/run.sh

   1 #!/bin/sh
   2 set -e
   3
   4 #Testing procedure for EMGLLF (inside this folder):
   5
   6 algo=$1 #EMGLLF or EMGrank,
   7         #second arg indicate if rebuild or rebuild+clean requested
   8
   9 if [ "$2" == 'c' ]; then
  10     #0.1) Clean package + C testing code
  11     find ../pkg/man/ -type f ! -name 'valse-package.Rd' -delete
  12     rm -f ../pkg/NAMESPACE
  13     # Erase object and library files
  14     rm -f ../pkg/src/*.so
  15     rm -f ../pkg/src/adapters/*.o
  16     make cclean
  17 fi
  18
  19 if [ "$2" == 'r' ] || [ "$2" == 'c' ]; then
  20     #0.2) Install current version of the package (WARNING: roxygen 2 v5.0.1)
  21     #   --> devtools::install_github('klutometis/roxygen@v5.0.1')
  22     echo "setwd('../pkg');library(roxygen2);roxygenize('.')" | R --slave
  23     R CMD INSTALL ../pkg
  24 fi
  25
  26 #1) Generate data using R versions of EMGLLF/EMGrank (slow, but trusted)
  27 cd generate_test_data/
  28 echo -e "source('generateRunSaveTest_$algo.R');\n \
  29         # I'm happy with default values - feel free to give args\n \
  30         generateRunSaveTest_$algo() " \
  31     | R --slave
  32 cd ..
  33
  34 #2) Compile test C code into an executable named "test.$algo"
  35 make test.$algo
  36
  37 #3) Run it with valgrind!
  38 #valgrind
  39 ./test.$algo