src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R

   1 generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5,
   2     maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
   3 {
   4     tau = 1e-6;
   5     seuil = 1e-15;
   6     L = length(glambda);
   7   A1 = array(0, dim=c(p, m+1, L))
   8   A2 = array(0, dim=c(p, m+1, L))
   9   for (i in 1:L)
  10     {
  11     A1[,1,i] = seq_len(p)
  12     A1[1:5,2,i] = seq_len(5)
  13     A2[,1,i] = seq_len(p)
  14     A2[1:5,2,i] = seq_len(5)
  15   }
  16     require(valse)
  17   params = valse:::basicInitParameters(n, p, m, k)
  18   xy = valse:::generateXYdefault(n, p, m, k)
  19
  20   testFolder = "data/"
  21   dir.create(testFolder, showWarnings=FALSE, mode="0755")
  22   #save inputs
  23   write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  24         row.names=F, col.names=F)
  25   write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  26         row.names=F, col.names=F)
  27   write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  28         row.names=F, col.names=F)
  29   write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  30         row.names=F, col.names=F)
  31   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  32         row.names=F, col.names=F)
  33   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  34         row.names=F, col.names=F)
  35   write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  36         row.names=F, col.names=F)
  37   write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
  38         row.names=F, col.names=F)
  39   write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  40         row.names=F, col.names=F)
  41   write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  42         row.names=F, col.names=F)
  43   write.table(as.double(seuil), paste(testFolder,"seuil",sep=""),
  44         row.names=F, col.names=F)
  45   write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  46         row.names=F, col.names=F)
  47   write.table(as.double(A1), paste(testFolder,"A1",sep=""),
  48         row.names=F, col.names=F)
  49   write.table(as.double(A2), paste(testFolder,"A2",sep=""),
  50         row.names=F, col.names=F)
  51   write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""),
  52         row.names=F, col.names=F)
  53
  54   res = constructionModelesLassoMLE(
  55         params$phiInit,params$rhoInit,params$piInit,params$gamInit,
  56         mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2)
  57
  58   #save output
  59   write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
  60   write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
  61   write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
  62   write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
  63 }