projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| 086ca318 | 1 | source("helper.R") |
| a3105972 | 2 | library(valse) |
| 825cf55f | 3 | |
| 99b372ae BA |
4 | generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, |
| 5 | gamma=1., lambda=0.5, tau=1e-6) | |
| 6 | { | |
| 9a73b966 | 7 | testFolder = "data/" |
| 99b372ae | 8 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
| 99b372ae | 9 | |
| 321e13a9 BA |
10 | params = basicInitParameters(n, p, m, k) |
| 11 | xy = generateXYdefault(n, p, m, k) | |
| c3bc4705 BA |
12 | |
| 13 | #save inputs | |
| e8bb4764 BA |
14 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), |
| 15 | row.names=F, col.names=F) | |
| 16 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
| 17 | row.names=F, col.names=F) | |
| 18 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
| 19 | row.names=F, col.names=F) | |
| 20 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
| 21 | row.names=F, col.names=F) | |
| 22 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
| 23 | row.names=F, col.names=F) | |
| 24 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
| 25 | row.names=F, col.names=F) | |
| 26 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
| 27 | row.names=F, col.names=F) | |
| 28 | write.table(as.double(lambda), paste(testFolder,"lambda",sep=""), | |
| 29 | row.names=F, col.names=F) | |
| ef67d338 | 30 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
| e8bb4764 | 31 | row.names=F, col.names=F) |
| ef67d338 | 32 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
| e8bb4764 BA |
33 | row.names=F, col.names=F) |
| 34 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
| 35 | row.names=F, col.names=F) | |
| 825cf55f | 36 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), |
| e8bb4764 | 37 | row.names=F, col.names=F) |
| 99b372ae | 38 | |
| a3105972 BA |
39 | res = valse::EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini, |
| 40 | maxi,gamma,lambda,xy$X,xy$Y,tau,fast=FALSE) | |
| 99b372ae BA |
41 | |
| 42 | #save outputs | |
| a3105972 BA |
43 | write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F) |
| 44 | write.table(as.double(res$rho),paste(testFolder,"rho",sep=""),row.names=F,col.names=F) | |
| 45 | write.table(as.double(res$pi),paste(testFolder,"pi",sep=""),row.names=F,col.names=F) | |
| 46 | write.table(as.double(res$llh),paste(testFolder,"llh",sep=""),row.names=F,col.names=F) | |
| 47 | write.table(as.double(res$S),paste(testFolder,"S",sep=""),row.names=F,col.names=F) | |
| 48 | write.table(as.integer(res$affec),paste(testFolder,"affec",sep=""),row.names=F,col.names=F) | |
| 99b372ae | 49 | } |