From: Benjamin Goehry <benjamin.goehry@math.u-psud.fr>
Date: Mon, 16 Jan 2017 11:54:48 +0000 (+0100)
Subject:  ajout test
X-Git-Url: https://git.auder.net/variants/Chakart/doc/mini-custom.min.css?a=commitdiff_plain;h=dc4252096180c25408d656a1442579bbd8dfa82f;p=valse.git

 ajout test
---

diff --git a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R
new file mode 100644
index 0000000..d367bfd
--- /dev/null
+++ b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R
@@ -0,0 +1,76 @@
+generateRunSaveTest_constructionModelesLassoMLE = function(n, p, m, k, mini, maxi, gamma, glambda, varargin){
+  #set defaults for optional inputs
+  optargs = c(200 15 10 3 5 10 1.0 list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
+  #replace defaults by user parameters
+  optargs[1:length(varargin)] = varargin
+  n = optargs[1]
+  p = optargs[2]
+  m = optargs[3]
+  k = optargs[4]
+  mini = optargs[5]
+  maxi = optargs[6]
+  gamma = optargs[7]
+  glambda = optargs[8]
+  tau = 1e-6
+  seuil = 1e-15
+  L = length(glambda)
+  
+  #Generate phiInit,piInit,...
+  basicInit = basicInitParameters(n, p, m, k)
+  phiInit = basicInit$phiInit
+  rhoInit = basicInit$rhoInit
+  piInit = basicInit$piInit
+  gamInit = basicInit$gamInit
+  
+  #Generate X and Y
+  generateIOdef = generateIOdefault(n, p, m, k)
+  X = generateIOdef$X
+  Y = generateIOdef$Y
+
+  A2 = array(0, dim=c(p, m+1, L))
+  A1 = array(0, dim=c(p, m+1, L))
+  for(i in 1:L){
+    for(j in 1:p){
+      A2[j, 1, i] = j
+      A1[j, 1, i] = j
+    }
+    for(k in 1:5){
+      A2[k,2,i] = k
+      A1[k,2,i] = k
+    }
+  }
+
+  testFolder = 'data/'
+  dir.create(testFolder)
+  delimiter = ' '
+  
+  
+  #save inputs
+  write(strcat(testFolder,'phiInit'), reshape(phiInit,1), delimiter)
+  write(strcat(testFolder,'rhoInit'), reshape(rhoInit,1), delimiter)
+  write(strcat(testFolder,'piInit'), piInit, delimiter)
+  write(strcat(testFolder,'gamInit'), reshape(gamInit,1), delimiter)
+  write(strcat(testFolder,'mini'), mini, delimiter)
+  write(strcat(testFolder,'maxi'), maxi, delimiter)
+  write(strcat(testFolder,'gamma'), gamma, delimiter)
+  write(strcat(testFolder,'glambda'), glambda, delimiter)
+  write(strcat(testFolder,'X'), reshape(X,1), delimiter)
+  write(strcat(testFolder,'Y'), reshape(Y,1), delimiter)
+  mwrite(strcat(testFolder,'seuil'), seuil, delimiter)
+  write(strcat(testFolder,'tau'), tau, delimiter)
+  write(strcat(testFolder,'A1'), reshape(A1,1), delimiter)
+  write(strcat(testFolder,'A2'), reshape(A2,1), delimiter)
+  write(strcat(testFolder,'dimensions'), [n,p,m,k,L], delimiter)
+  
+  construct_LME = constructionModelesLassoMLE(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,glambda,X,Y,seuil,tau,A1,A2)
+  phi = construct_LME$phi
+  rho = construct_LME$rho
+  pi = construct_LME$pi
+  lvraisemblance = construct_LME$lvraisemblance
+  
+  #save output
+  write(strcat(testFolder,'phi'), reshape(phi,1), delimiter);
+  write(strcat(testFolder,'rho'), reshape(rho,1), delimiter);
+  write(strcat(testFolder,'pi'), reshape(pi,1), delimiter);
+  write(strcat(testFolder,'lvraisemblance'), reshape(lvraisemblance,1), delimiter);
+}