Commit | Line | Data |
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df3ef2db BA |
1 | testEMGLLF = function() |
2 | { | |
3 | testFolder = "data/" | |
4 | array_delimiter = " " | |
5 | ||
6 | #get dimensions | |
7 | dimensions = read.table(paste(testFolder,"dimensions",sep=""), header=FALSE, | |
8 | sep=array_delimiter) | |
9 | n = dimensions[1] | |
10 | p = dimensions[2] | |
11 | m = dimensions[3] | |
12 | k = dimensions[4] | |
13 | ||
14 | #get all input arrays | |
15 | phiInit = read.table(paste(testFolder,"phiInit",sep=""), header=FALSE, sep=array_delimiter) | |
16 | rhoInit = read.table(paste(testFolder,"rhoInit",sep=""), header=FALSE, sep=array_delimiter) | |
17 | piInit = read.table(paste(testFolder,"piInit",sep=""), header=FALSE, sep=array_delimiter) | |
18 | gamInit = read.table(paste(testFolder,"gamInit",sep=""), header=FALSE, sep=array_delimiter) | |
19 | mini = read.table(paste(testFolder,"mini",sep=""), header=FALSE, sep=array_delimiter) | |
20 | maxi = read.table(paste(testFolder,"maxi",sep=""), header=FALSE, sep=array_delimiter) | |
21 | gamma = read.table(paste(testFolder,"gamma",sep=""), header=FALSE, sep=array_delimiter) | |
22 | lambda = read.table(paste(testFolder,"lambda",sep=""), header=FALSE, sep=array_delimiter) | |
23 | X = read.table(paste(testFolder,"X",sep=""), header=FALSE, sep=array_delimiter) | |
24 | Y = read.table(paste(testFolder,"Y",sep=""), header=FALSE, sep=array_delimiter) | |
25 | tau = read.table(paste(testFolder,"tau",sep=""), header=FALSE, sep=array_delimiter) | |
26 | ||
27 | #run EMGLLF.c | |
28 | EMG = .Call("EMGLLF_core",phiInit,rhoInit,piInit1,gamInit,mini,maxi,gamma,lambda,X,Y,tau, | |
29 | PACKAGE="valse") | |
30 | phi = EMG$phi | |
31 | rho = EMG$rho | |
32 | pi = EMG$pi | |
33 | LLF = EMG$LLF | |
34 | S = EMG$S | |
35 | ||
36 | #get all stored outputs | |
37 | ref_phi = read.table(paste(testFolder,"phi",sep=""), header=FALSE, sep=array_delimiter) | |
38 | ref_rho = read.table(paste(testFolder,"rho",sep=""), header=FALSE, sep=array_delimiter) | |
39 | ref_pi = read.table(paste(testFolder,"pi",sep=""), header=FALSE, sep=array_delimiter) | |
40 | ref_LLF = read.table(paste(testFolder,"LLF",sep=""), header=FALSE, sep=array_delimiter) | |
41 | ref_S = read.table(paste(testFolder,"S",sep=""), header=FALSE, sep=array_delimiter) | |
42 | ||
43 | #check that output correspond to stored output | |
44 | tol = 1e-5; | |
45 | checkOutput("phi",phi,ref_phi,tol); | |
46 | checkOutput("rho",rho,ref_rho,tol); | |
47 | checkOutput("pi",pi,ref_pi,tol); | |
48 | checkOutput("LLF",LLF,ref_LLF,tol); | |
49 | checkOutput("S",S,ref_S,tol); | |
50 | } |