code/ppam.sh

   1 #!/bin/bash
   2 #PBS -l walltime=00:05:00
   3 #PBS -l nodes=4:ppn=4,pmem=1gb
   4 #PBS -o output.txt
   5 #PBS -e error.txt
   6
   7 WORKDIR="/workdir/auder/ppam_mpi/src"
   8 cd $WORKDIR
   9
  10 rm -f output.txt
  11 rm -f error.txt
  12
  13 saveLibPath=$LD_LIBRARY_PATH
  14 LD_LIBRARY_PATH=/workdir/cds/lib:/opt/openmpi/lib:$LD_LIBRARY_PATH
  15 export LD_LIBRARY_PATH
  16
  17 # ppam args (in case of clustering) =
  18 #   1: path to binary dataset
  19 #   2: series per processor
  20 #   3: number of clusters
  21 #   4: boolean to randomize series sampling
  22 #   5: type of distance (1 for L1, 2 for L2...)
  23 mpirun -np 16 ppam cluster ../data/2009_first10000.bin 300 7 0 1
  24
  25 LD_LIBRARY_PATH=$saveLibPath
  26 export LD_LIBRARY_PATH