valse.git
4 years agomerge with remote
Benjamin Auder [Thu, 6 Feb 2020 19:18:59 +0000 (20:18 +0100)]
merge with remote

4 years agoRefresh package, suppress what we won't do right now. Focus on doc + debug
Benjamin Auder [Sat, 11 Jan 2020 17:26:14 +0000 (18:26 +0100)]
Refresh package, suppress what we won't do right now. Focus on doc + debug

5 years agoAdd old project select as a zipped subfolder
Benjamin Auder [Thu, 6 Dec 2018 00:42:55 +0000 (01:42 +0100)]
Add old project select as a zipped subfolder

6 years agoImprove README
Benjamin Auder [Sat, 27 Jan 2018 21:39:44 +0000 (22:39 +0100)]
Improve README

6 years agoImprove README
Benjamin Auder [Sat, 27 Jan 2018 21:37:14 +0000 (22:37 +0100)]
Improve README

6 years agoFirst commit
Benjamin Auder [Mon, 22 Jan 2018 14:12:50 +0000 (15:12 +0100)]
First commit

6 years agoadd some TODO and skeleton for test/test_EMGrank.R
Benjamin Auder [Fri, 3 Nov 2017 09:59:17 +0000 (10:59 +0100)]
add some TODO and skeleton for test/test_EMGrank.R

6 years agoprogress in debug: fix LLF/llh mismatch, and length + add adapter test in test/
Benjamin Auder [Fri, 3 Nov 2017 09:54:04 +0000 (10:54 +0100)]
progress in debug: fix LLF/llh mismatch, and length + add adapter test in test/

6 years agofixing attempt: LLF size in src/adapters/EMGLLF seemed wrong
Benjamin Auder [Fri, 3 Nov 2017 08:19:52 +0000 (09:19 +0100)]
fixing attempt: LLF size in src/adapters/EMGLLF seemed wrong

6 years agocosmetics (rename tau to eps everywhere)
Benjamin Auder [Fri, 3 Nov 2017 08:15:25 +0000 (09:15 +0100)]
cosmetics (rename tau to eps everywhere)

6 years agocosmetics
Benjamin Auder [Fri, 3 Nov 2017 07:56:34 +0000 (08:56 +0100)]
cosmetics

7 years agobasic test OK, but problem with 'fast' EMGLLF output in last EMilie test
Benjamin Auder [Wed, 30 Aug 2017 06:57:54 +0000 (08:57 +0200)]
basic test OK, but problem with 'fast' EMGLLF output in last EMilie test

7 years agoupdate EMGLLF.c following changes in EMGLLF.R
Benjamin Auder [Tue, 29 Aug 2017 15:03:37 +0000 (17:03 +0200)]
update EMGLLF.c following changes in EMGLLF.R

7 years agostarted to look at EMGLLF.c
Benjamin Auder [Thu, 24 Aug 2017 17:03:08 +0000 (19:03 +0200)]
started to look at EMGLLF.c

7 years agofix the likelihood computation. fix some other few things
emilie [Wed, 5 Jul 2017 15:58:05 +0000 (17:58 +0200)]
fix the likelihood computation. fix some other few things

7 years agostill some problems with LLF
emilie [Fri, 21 Apr 2017 14:56:37 +0000 (16:56 +0200)]
still some problems with LLF

7 years ago...
emilie [Fri, 21 Apr 2017 14:24:06 +0000 (16:24 +0200)]
...

7 years agoMerge branch 'master' of auder.net:valse
Benjamin Auder [Fri, 21 Apr 2017 15:14:10 +0000 (17:14 +0200)]
Merge branch 'master' of auder.net:valse

7 years agore-apply a few undone updates; simplifiy a bit args in main
Benjamin Auder [Fri, 21 Apr 2017 15:14:02 +0000 (17:14 +0200)]
re-apply a few undone updates; simplifiy a bit args in main

7 years ago...
emilie [Fri, 21 Apr 2017 14:23:12 +0000 (16:23 +0200)]
...

7 years agoinstall the package
emilie [Fri, 21 Apr 2017 14:04:27 +0000 (16:04 +0200)]
install the package

7 years agoessai fusion
emilie [Fri, 21 Apr 2017 13:58:12 +0000 (15:58 +0200)]
essai fusion

7 years agoessai fusion
emilie [Fri, 21 Apr 2017 13:52:14 +0000 (15:52 +0200)]
essai fusion

7 years agofix few things for the LLF
emilie [Fri, 21 Apr 2017 13:37:19 +0000 (15:37 +0200)]
fix few things for the LLF

7 years agofix for m==1
Benjamin Auder [Fri, 21 Apr 2017 13:33:07 +0000 (15:33 +0200)]
fix for m==1

7 years agoFix numerical problems in EMGLLF (R version)
Benjamin Auder [Thu, 20 Apr 2017 21:38:26 +0000 (23:38 +0200)]
Fix numerical problems in EMGLLF (R version)

7 years agofix few things
emilie [Wed, 19 Apr 2017 11:46:17 +0000 (13:46 +0200)]
fix few things

7 years agofix a few weird things
Benjamin Auder [Fri, 14 Apr 2017 22:29:28 +0000 (00:29 +0200)]
fix a few weird things

7 years agoremove pre-commit hook; fix weird formatting from formatR package
Benjamin Auder [Fri, 14 Apr 2017 16:43:47 +0000 (18:43 +0200)]
remove pre-commit hook; fix weird formatting from formatR package

7 years agoattempt to fix ugly code...
Benjamin Auder [Fri, 14 Apr 2017 15:49:38 +0000 (17:49 +0200)]
attempt to fix ugly code...

7 years agoindent everything: google rules...
Benjamin Auder [Fri, 14 Apr 2017 15:46:32 +0000 (17:46 +0200)]
indent everything: google rules...

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:45:27 +0000 (17:45 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:44:47 +0000 (17:44 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:43:52 +0000 (17:43 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:40:37 +0000 (17:40 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:39:59 +0000 (17:39 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:37:43 +0000 (17:37 +0200)]
test auto-indenter

7 years agotest auto-indenter
Benjamin Auder [Fri, 14 Apr 2017 15:36:10 +0000 (17:36 +0200)]
test auto-indenter

7 years agoadd automatic code formatter following https://google.github.io/styleguide/Rguide.xml
Benjamin Auder [Fri, 14 Apr 2017 15:30:04 +0000 (17:30 +0200)]
add automatic code formatter following https://google.github.io/styleguide/Rguide.xml

7 years agocosmetics
Benjamin Auder [Fri, 14 Apr 2017 15:09:50 +0000 (17:09 +0200)]
cosmetics

7 years agofix few things
emilie [Fri, 14 Apr 2017 11:12:42 +0000 (13:12 +0200)]
fix few things

7 years agofix initialization and made some update
emilie [Thu, 13 Apr 2017 14:24:26 +0000 (16:24 +0200)]
fix initialization and made some update

7 years agofix EMGRank.R, and add some lines in the roxygen code for some functions
emilie [Thu, 13 Apr 2017 11:52:32 +0000 (13:52 +0200)]
fix EMGRank.R, and add some lines in the roxygen code for some functions

7 years agofix few things
emilie [Wed, 12 Apr 2017 16:31:21 +0000 (18:31 +0200)]
fix few things

7 years agofix many problems (models appearing twice, irrelevant coefficients in a relevant...
emilie [Wed, 12 Apr 2017 15:57:28 +0000 (17:57 +0200)]
fix many problems (models appearing twice, irrelevant coefficients in a relevant column among others)

7 years agoupdate the output to have the classification
emilie [Wed, 12 Apr 2017 10:54:11 +0000 (12:54 +0200)]
update the output to have the classification

7 years agofix the problem with the likelihood for the R code
emilie [Wed, 12 Apr 2017 10:21:09 +0000 (12:21 +0200)]
fix the problem with the likelihood for the R code

7 years agofew updates
emilie [Wed, 12 Apr 2017 09:45:12 +0000 (11:45 +0200)]
few updates

7 years agoremove extra prints
Benjamin Auder [Tue, 11 Apr 2017 23:00:38 +0000 (01:00 +0200)]
remove extra prints

7 years agoUpdate plot_valse and add it to main.R
emilie [Tue, 11 Apr 2017 16:36:21 +0000 (18:36 +0200)]
Update plot_valse and add it to main.R

7 years agoUpdate main.R
emilie [Tue, 11 Apr 2017 14:18:06 +0000 (16:18 +0200)]
Update main.R

7 years agofix EMGLLF.c (there was one extra iteration)
Benjamin Auder [Tue, 11 Apr 2017 13:10:52 +0000 (15:10 +0200)]
fix EMGLLF.c (there was one extra iteration)

7 years agoAdd 'fast' argument to select C code or R code
Benjamin Auder [Tue, 11 Apr 2017 12:41:31 +0000 (14:41 +0200)]
Add 'fast' argument to select C code or R code

7 years agoAdd 'fast' argument to select C code or R code
Benjamin Auder [Tue, 11 Apr 2017 12:35:56 +0000 (14:35 +0200)]
Add 'fast' argument to select C code or R code

7 years agofix test; EMGLLF.c != EMGLLF.R now...
Benjamin Auder [Tue, 11 Apr 2017 09:57:11 +0000 (11:57 +0200)]
fix test; EMGLLF.c != EMGLLF.R now...

7 years agosmall fix + attempt for a correct 'tableauRecap'
Benjamin Auder [Tue, 11 Apr 2017 01:28:51 +0000 (03:28 +0200)]
small fix + attempt for a correct 'tableauRecap'

7 years agoslightly simplifiy EMGLLF.c, check that C == R (code reading only)
Benjamin Auder [Tue, 11 Apr 2017 00:59:29 +0000 (02:59 +0200)]
slightly simplifiy EMGLLF.c, check that C == R (code reading only)

7 years agore-indent (I should really add a hook...)
Benjamin Auder [Wed, 5 Apr 2017 22:18:35 +0000 (00:18 +0200)]
re-indent (I should really add a hook...)

7 years agosimplify EMGLLF_R a bit
Benjamin Auder [Wed, 5 Apr 2017 22:17:56 +0000 (00:17 +0200)]
simplify EMGLLF_R a bit

7 years agoadd verbose possibility in sub-functions
Benjamin Auder [Wed, 5 Apr 2017 16:21:49 +0000 (18:21 +0200)]
add verbose possibility in sub-functions

7 years ago'update'
Benjamin Auder [Wed, 5 Apr 2017 12:00:16 +0000 (14:00 +0200)]
'update'

7 years agofix some errors
emilie [Tue, 4 Apr 2017 16:02:05 +0000 (18:02 +0200)]
fix some errors

7 years agotemporary fix: use R version of EMGLLF and EMGrank in package
Benjamin Auder [Tue, 4 Apr 2017 10:51:52 +0000 (12:51 +0200)]
temporary fix: use R version of EMGLLF and EMGrank in package

7 years agoupdate main.R and fix some errors
emilie [Tue, 4 Apr 2017 08:57:21 +0000 (10:57 +0200)]
update main.R and fix some errors

7 years agoseveral modifs - pkg looks better (but untested)
Benjamin Auder [Mon, 3 Apr 2017 16:23:38 +0000 (18:23 +0200)]
several modifs - pkg looks better (but untested)

7 years agowork on constructionModeles + main (2 levels or //isation)
Benjamin Auder [Mon, 3 Apr 2017 11:07:37 +0000 (13:07 +0200)]
work on constructionModeles + main (2 levels or //isation)

7 years agoremove selectiontotale, parallelize main.R + add conditional verbose traces
Benjamin Auder [Mon, 3 Apr 2017 10:00:08 +0000 (12:00 +0200)]
remove selectiontotale, parallelize main.R + add conditional verbose traces

7 years agono need to generate random IO params: migrate in test. Add roxygen2 NAMESPACE-generat...
Benjamin Auder [Sun, 2 Apr 2017 13:17:21 +0000 (15:17 +0200)]
no need to generate random IO params: migrate in test. Add roxygen2 NAMESPACE-generator. roxygenize pkg a bit more

7 years agofix/improve selectVariables.R
Benjamin Auder [Sun, 2 Apr 2017 12:28:17 +0000 (14:28 +0200)]
fix/improve selectVariables.R

7 years agofirst draft of EMGLLF.R and EMGrank.R (should work)
Benjamin Auder [Sun, 2 Apr 2017 10:18:09 +0000 (12:18 +0200)]
first draft of EMGLLF.R and EMGrank.R (should work)

7 years agoadd affect[ations] in EMGLLF.c return
Benjamin Auder [Sun, 2 Apr 2017 09:32:20 +0000 (11:32 +0200)]
add affect[ations] in EMGLLF.c return

7 years agoFix errors in EMGLLF.c :)
Benjamin Auder [Sun, 2 Apr 2017 09:11:35 +0000 (11:11 +0200)]
Fix errors in EMGLLF.c :)

7 years agoEasier testing pocedure
Benjamin Auder [Sat, 1 Apr 2017 22:41:54 +0000 (00:41 +0200)]
Easier testing pocedure

7 years agore-indent and remove prints in generateSampleInputs
Benjamin Auder [Thu, 23 Mar 2017 16:00:39 +0000 (17:00 +0100)]
re-indent and remove prints in generateSampleInputs

7 years agoupdate generateBlabla
emilie [Thu, 23 Mar 2017 15:42:44 +0000 (16:42 +0100)]
update generateBlabla

7 years agodowngrade roxygen2 to v5.0.1, rename EMGLLF -> EMGLLF_R
Benjamin Auder [Thu, 23 Mar 2017 14:46:29 +0000 (15:46 +0100)]
downgrade roxygen2 to v5.0.1, rename EMGLLF -> EMGLLF_R

7 years agoAprès mon merge héroïque
emilie [Thu, 23 Mar 2017 13:51:41 +0000 (14:51 +0100)]
Après mon merge héroïque

7 years agoAprès mon merge héroïque
emilie [Thu, 23 Mar 2017 13:45:48 +0000 (14:45 +0100)]
Après mon merge héroïque

7 years agofix typo in EMGLLF.c
Benjamin Auder [Thu, 23 Mar 2017 10:25:49 +0000 (11:25 +0100)]
fix typo in EMGLLF.c

7 years agore-fix test/README
Benjamin Auder [Mon, 20 Mar 2017 03:22:14 +0000 (04:22 +0100)]
re-fix test/README

7 years agoremove also NY21 as in R code
Benjamin Auder [Mon, 20 Mar 2017 03:18:01 +0000 (04:18 +0100)]
remove also NY21 as in R code

7 years agoalign C version of EMGLLF on R version
Benjamin Auder [Mon, 20 Mar 2017 03:07:03 +0000 (04:07 +0100)]
align C version of EMGLLF on R version

7 years agofix magic typo in test/README
Benjamin Auder [Sat, 18 Mar 2017 16:12:12 +0000 (17:12 +0100)]
fix magic typo in test/README

7 years agounneccessary changes
emilie [Sat, 18 Mar 2017 16:11:50 +0000 (17:11 +0100)]
unneccessary changes

7 years agoupdate test/ folder for experimentations
Benjamin Auder [Sat, 18 Mar 2017 16:07:25 +0000 (17:07 +0100)]
update test/ folder for experimentations

7 years agono need to source self code in a package: function already loaded
Benjamin Auder [Sat, 18 Mar 2017 03:45:49 +0000 (04:45 +0100)]
no need to source self code in a package: function already loaded

7 years agomissing safety + cd.. in test/README
Benjamin Auder [Sat, 18 Mar 2017 03:04:31 +0000 (04:04 +0100)]
missing safety + cd.. in test/README

7 years agoNecessary changes to generate/run C tests.
Benjamin Auder [Sat, 18 Mar 2017 02:38:30 +0000 (03:38 +0100)]
Necessary changes to generate/run C tests.
WARNING: still problem with det(rho) in EMGLLF.R

7 years agoAdd test/README: shell file self-documented
Benjamin Auder [Sat, 18 Mar 2017 02:37:51 +0000 (03:37 +0100)]
Add test/README: shell file self-documented

7 years agoDelete NAMESPACE + all Rd files but valse-package.Rd: they are generated by roxygen2
Benjamin Auder [Sat, 18 Mar 2017 02:35:28 +0000 (03:35 +0100)]
Delete NAMESPACE + all Rd files but valse-package.Rd: they are generated by roxygen2

7 years agoRename EMGLLF and EMGrank with suffix _R in generate_tests/.
Benjamin Auder [Sat, 18 Mar 2017 01:51:02 +0000 (02:51 +0100)]
Rename EMGLLF and EMGrank with suffix _R in generate_tests/.
Reason: these files will be run in an environment with valse loaded,
        so there might (will) be conflicts with pkg EMGLLF/EMGrank

7 years agoRemove obsolete comments in generate_tests/EMGLLF.R
Benjamin Auder [Sat, 18 Mar 2017 01:49:10 +0000 (02:49 +0100)]
Remove obsolete comments in generate_tests/EMGLLF.R

7 years agoMore readable initialize.sh
Benjamin Auder [Sat, 18 Mar 2017 01:47:09 +0000 (02:47 +0100)]
More readable initialize.sh

7 years agoWARNING: remove .gitattributes and .gitfat from the index, and ignore them.
Benjamin Auder [Sat, 18 Mar 2017 01:44:09 +0000 (02:44 +0100)]
WARNING: remove .gitattributes and .gitfat from the index, and ignore them.
To get the files back, just re-run ./initialize.sh

7 years agoclean .gitattributes
Benjamin Auder [Sat, 18 Mar 2017 01:43:11 +0000 (02:43 +0100)]
clean .gitattributes

7 years agoprepare wrappers EMGLLF.R --> EMGLLF.c
Benjamin Auder [Sat, 18 Mar 2017 01:42:32 +0000 (02:42 +0100)]
prepare wrappers EMGLLF.R --> EMGLLF.c

7 years agobetter gitignore repartition and contents
Benjamin Auder [Sat, 18 Mar 2017 01:32:22 +0000 (02:32 +0100)]
better gitignore repartition and contents

7 years agoadd some folders; more complete package structure
Benjamin Auder [Sat, 18 Mar 2017 01:24:13 +0000 (02:24 +0100)]
add some folders; more complete package structure

7 years agofew last things
emilie [Fri, 17 Mar 2017 14:07:20 +0000 (15:07 +0100)]
few last things

7 years agofew modifications
emilie [Fri, 17 Mar 2017 12:15:22 +0000 (13:15 +0100)]
few modifications