{
library(morpheus)
res <- multiRun(
- list(n=n, p=p, beta=beta, b=b, optargs=list(K=K, link=link)),
+ list(n=n, p=p, beta=beta, b=b, K=K, link=link),
list(
# morpheus
function(fargs) {
library(morpheus)
- K <- fargs$optargs$K
- M <- computeMoments(fargs$X, fargs$Y)
- fargs$optargs$M <- M
- mu <- computeMu(fargs$X, fargs$Y, fargs$optargs)
+ K <- fargs$K
+ mu <- computeMu(fargs$X, fargs$Y, list(K=K))
+ op <- optimParams(fargs$X, fargs$Y, K, fargs$link)
+ x_init <- list(p=rep(1/K,K-1), beta=mu, b=rep(0,K))
res2 <- NULL
tryCatch({
- op <- optimParams(K,fargs$optargs$link,fargs$optargs)
- x_init <- list(p=rep(1/K,K-1), beta=mu, b=rep(0,K))
- res2 <- do.call(rbind, op$run(x_init))
- }, error = function(e) {
- res2 <- NA
- })
+ res2 <- do.call(rbind, op$run(x_init))
+ }, error = function(e) {})
res2
}
# ,
# function(fargs) {
# library(flexmix)
# source("../patch_Bettina/FLXMRglm.R")
-# K <- fargs$optargs$K
+# K <- fargs$K
# dat <- as.data.frame( cbind(fargs$Y,fargs$X) )
# res2 <- NULL
# tryCatch({
),
prepareArgs = function(fargs, index) {
library(morpheus)
- io = generateSampleIO(fargs$n, fargs$p, fargs$beta, fargs$b, fargs$optargs$link)
+ io = generateSampleIO(fargs$n, fargs$p, fargs$beta, fargs$b, fargs$link)
fargs$X = io$X
fargs$Y = io$Y
- fargs$optargs$K = ncol(fargs$beta)
- fargs$optargs$M = computeMoments(io$X,io$Y)
fargs
}, N=N, ncores=ncores, verbose=TRUE)
p <- c(p, 1-sum(p))
}
mr <- optimBeta(N, n, K, p, beta, b, link, ncores)
-mr_params <- list("N"=N, "n"=n, "K"=K, "d"=d, "link"=link,
+mr_params <- list("N"=N, "nc"=ncores, "n"=n, "K"=K, "d"=d, "link"=link,
"p"=c(p,1-sum(p)), "beta"=beta, "b"=b)
-save("mr", "mr_params", file=paste("multirun_",n,"_",d,"_",link,".RData",sep=""))
+save("mr", "mr_params", file=paste("res_",n,"_",d,"_",link,".RData",sep=""))