src/test/generate_test_data/generateRunSaveTest_EMGLLF.R

   1 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
   2     gamma=1., lambda=0.5, tau=1e-6)
   3 {
   4     testFolder = "data/"
   5     dir.create(testFolder, showWarnings=FALSE, mode="0755")
   6     delimiter = " "
   7
   8     #save inputs
   9     params = basicInitParameters(n, p, m, k)
  10     io = generateIOdefault(n, p, m, k)
  11     write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter);
  12     write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter);
  13     write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter);
  14     write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter);
  15     write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter);
  16     write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter);
  17     write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter);
  18     write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter);
  19     write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter);
  20     write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter);
  21     write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter);
  22     write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter);
  23
  24     res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
  25         gamma,lambda,io$X,io$Y,tau);
  26
  27     #save outputs
  28     write.table(paste(testFolder,"phi",sep=""), res$phi, sep=delimiter);
  29     write.table(paste(testFolder,"rho",sep=""), res$rho, sep=delimiter);
  30     write.table(paste(testFolder,"pi",sep=""), res$pi, sep=delimiter);
  31     write.table(paste(testFolder,"LLF",sep=""), res$LLF, sep=delimiter);
  32     write.table(paste(testFolder,"S",sep=""), res$S, sep=delimiter);
  33 }