src/test/generate_test_data/generateRunSaveTest_selectiontotale.R

   1 generateRunSaveTest_selectiontotale= function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
   2     glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
   3 {
   4     tau = 1e-6;
   5     seuil = 1e-15;
   6     require(valse)
   7   params = valse:::basicInitParameters(n, p, m, k)
   8   xy = valse:::generateXYdefault(n, p, m, k)
   9     L = length(glambda)
  10
  11   testFolder = "data/"
  12   dir.create(testFolder, showWarnings=FALSE, mode="0755")
  13   #save inputs
  14   write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  15         row.names=F, col.names=F)
  16   write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  17         row.names=F, col.names=F)
  18   write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  19         row.names=F, col.names=F)
  20   write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  21         row.names=F, col.names=F)
  22   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  23         row.names=F, col.names=F)
  24   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  25         row.names=F, col.names=F)
  26   write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  27         row.names=F, col.names=F)
  28   write.table(as.double(glambda), paste(testFolder,"lambda",sep=""),
  29         row.names=F, col.names=F)
  30   write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  31         row.names=F, col.names=F)
  32   write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  33         row.names=F, col.names=F)
  34   write.table(as.double(seuil), paste(testFolder,"seuil",sep=""),
  35         row.names=F, col.names=F)
  36   write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  37         row.names=F, col.names=F)
  38   write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""),
  39         row.names=F, col.names=F)
  40
  41   res = selectiontotale(params$phiInit,params$rhoInit,params$piInit,params$gamInit,
  42         mini,maxi,gamma,glambda,xy$X,xy$Y,seuil, tau)
  43
  44   #save output
  45   write.table(as.double(res$A1), paste(testFolder,"A1",sep=""), row.names=F, col.names=F)
  46   write.table(as.double(res$A2), paste(testFolder,"A2",sep=""), row.names=F, col.names=F)
  47   write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
  48   write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
  49 }