Commit | Line | Data |
---|---|---|
31463ab8 | 1 | source("EMGrank.R") |
086ca318 | 2 | source("helper.R") |
825cf55f | 3 | |
c3bc4705 BA |
4 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, |
5 | rank = c(1,2,4)) | |
6 | { | |
f1b906da | 7 | tau = 1e-6 |
f1b906da | 8 | pi = rep(1.0/k, k) |
ef67d338 BA |
9 | rho = array(dim=c(m,m,k)) |
10 | for(i in 1:k) | |
f1b906da | 11 | rho[,,i] = diag(1,m) |
9ade3f1b | 12 | require(valse) |
321e13a9 | 13 | xy = generateXYdefault(n, p, m, k) |
c3bc4705 | 14 | |
825cf55f | 15 | testFolder = "../data/" |
ef67d338 | 16 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
f1b906da | 17 | #save inputs |
c3bc4705 BA |
18 | write.table(as.double(rho), paste(testFolder,"rho",sep=""), |
19 | row.names=F, col.names=F) | |
20 | write.table(as.double(pi), paste(testFolder,"pi",sep=""), | |
21 | row.names=F, col.names=F) | |
22 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
23 | row.names=F, col.names=F) | |
24 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
25 | row.names=F, col.names=F) | |
ef67d338 | 26 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
c3bc4705 | 27 | row.names=F, col.names=F) |
ef67d338 | 28 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
c3bc4705 BA |
29 | row.names=F, col.names=F) |
30 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
31 | row.names=F, col.names=F) | |
32 | write.table(as.integer(rank), paste(testFolder,"rank",sep=""), | |
33 | row.names=F, col.names=F) | |
825cf55f | 34 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), |
c3bc4705 BA |
35 | row.names=F, col.names=F) |
36 | ||
f7244815 | 37 | res = EMGrank_R(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank) |
c3bc4705 | 38 | |
f1b906da | 39 | #save output |
c3bc4705 BA |
40 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F) |
41 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F) | |
f1b906da | 42 | } |