| 1 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4)){ |
| 2 | testFolder = "data/" |
| 3 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
| 4 | delimiter = " " |
| 5 | |
| 6 | tau = 1e-6 |
| 7 | |
| 8 | pi = rep(1.0/k, k) |
| 9 | rho = array(0, dim=c(m,m,k)) |
| 10 | |
| 11 | for(i in 1:k){ |
| 12 | rho[,,i] = diag(1,m) |
| 13 | } |
| 14 | |
| 15 | #Generate X and Y |
| 16 | generateIOdef = generateIOdefault(n, p, m, k) |
| 17 | |
| 18 | #save inputs |
| 19 | write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter) |
| 20 | write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter) |
| 21 | write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter) |
| 22 | write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter) |
| 23 | write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter) |
| 24 | write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter) |
| 25 | write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter) |
| 26 | write.table(paste(testFolder,"rank",sep=""), rank, sep=delimiter) |
| 27 | write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter) |
| 28 | |
| 29 | EMG_rank = EMG(pi,rho,mini,maxi,X,Y,tau,rank) |
| 30 | |
| 31 | #save output |
| 32 | write.table(paste(testFolder,"phi",sep=""), EMG_rank$phi, sep=delimiter) |
| 33 | write.table(paste(testFolder,"LLF",sep=""), EMG_rank$LLF, sep=delimiter) |
| 34 | } |