scripts/make_summaries/launchReports.sh

   1 #!/bin/bash
   2
   3 mkdir -p ../summariesByStation
   4
   5 files=`ls ../aggexp/data/*.csv`
   6 for file in $files; do
   7     stationName=`basename -s .csv $file`
   8     sed "s/STATIONNAME/$stationName/g" modele.Rnw > tmp.Rnw
   9     case $stationName in
  10     "ALE"|"MRA"|"NEI"|"MAS")
  11         sed -i "s/EXPERTSINDICES/c(1:4,6:10)/" tmp.Rnw
  12         ;;
  13     *)
  14         sed -i "s/EXPERTSINDICES/1:10/" tmp.Rnw
  15         ;;
  16     esac
  17     R CMD BATCH runSummary.R
  18     pdflatex tmp.tex
  19     mv tmp.pdf ../summariesByStation/$stationName.pdf
  20 done
  21
  22 rm -f tmp*
  23 rm -f .RData
  24 rm -f runSummary.Rout
  25 if [ -d figs/ ]; then
  26     rm -rf figs/
  27 fi